Gene detail

Gene detail information of Glyur000316s00018271

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26695.1	1.00E-50	Ran BP2/NZF zinc finger-like superfamily protein
NR	XP_003609267.1	1.43E-88	Zinc finger protein-like Ser/Thr protein kinase-like protein [Medicago truncatula]
trEMBL	tr\|G7JVA8\|G7JVA8_MEDTR	6.00E-89	Zinc finger (Ran-binding) family protein {ECO:0000313\|EMBL:AES91464.2}

Sequence

Transcript Sequence

>Glyur000316s00018271.1
NGTGCATGAAGTTGGAATCTATTCCCCACAATTTATTTTTACTCTCAGTACTTCCCCAATAAATGCACAGACACCATCAAGGACTGCATAAGCCTACCCAGTGAAGGTTTATGTGCAAGTTGGATGAGTACAATGTACAGAGCGCAATGCATTTTCACACATGGATCAGATTGATAAATGTTGGGTTGGATGAGCTCACAGTGACATTGTTGTTAAACAGAGCATAAGTGGGGATAGATATATATTGGATTCTATTGTGGATTTGCAGCCTACCACATAACAACTACCCCTCATATAGCCTTGCTTCCCCTGGATATGTTCCTCTCAATAATGCATAGGAATCACGTAAAGATGGGCAAAAAAAGAGAGTAGATAGAACAAAACGTGTAAACATGCACTATTTACCCAACTTTCCCACCATTTCTAACGAGAGAAGCACTAGTAAGAAGNTTTTATCGACATCTTCCAATAATTTCTACTTTTAGAATCTCATGTCAAGAAAACCATTTCCAGATTACCAGGGAACGAAAAGAGACANCCATGTCCCCCACAATAGGTCTTACGACCAGTATATAAAGCCTCACAACACAAGCACTAAACTCACACCATCTTGATTTACAAGCCATTCTTCAACAACTATAGCANCAACAACAATTATTCACATAATTCTTCTTGAAAGGAAAATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAAAGTTGTGGGTACCCCAAGTATGGAGGCCCTGACCCATCAACCTATAGATACAACAGGACTGAAGCGTTGGCAGGGGACTGGCTTTGCACCGCTATGAACTGTGGAGCTCACAACTATGCCAGCCGATCAAGCTGCTATAGATGTGGTGCATTAAAAGATGATTATTCTTCTGGATATGGGGGGAACATGGCAGGCTCTGGAGGATATGGATCTGATTGCAGTTATCCCCCAGGATGGAAATCTGGAGACTGGATTTGCCCTAGAATTGGCTGTGGAGTGCATAATTATGCTAGCAGGACAGAATGCTTCAAATGCAAAATGACAAGGGATTTTGGTGGTGCTGACTGAAAGGAAAAAAAAGTCAGTAGACTCGCAATATCACCGATTTCCCTTAACATCTTCTTTTCCAAACAACATTGTATTTTGCTTTCCTCATGTTAAGCTCTACATAAATCATGAATGAAGGCCCTTGTTAGAATCATAGCAATGTTTTTTCTACAGGAAGGATATCCGGCAGTTATTGTTTCTNGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	78590	81101	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018271.1	PF00641.13	zf-RanBP	6	32	0.0016
Glyur000316s00018271.1	PF00641.13	zf-RanBP	49	77	1.30E-06
Glyur000316s00018271.1	PF00641.13	zf-RanBP	105	131	3.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.120
SRR1783600	control	0.164
SRR1783602	moderate drought stress	0.282
SRR1811619	moderate drought stress	0.335

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.357
DRR006520	Root Summer glycyrrhizin high producing strain	3.608
DRR006521	Root Winter glycyrrhizin high producing strain	0.605
DRR006522	Root Winter glycyrrhizin high producing strain	0.575
DRR006523	Root Summer glycyrrhizin low producing strain	1.502
DRR006524	Root Summer glycyrrhizin low producing strain	1.635
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.914

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.382
SRR2868004	Drought Stress (root)	0.361
SRR2967015	Control (root)	0.080

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.154
SRR9715740	Leaf	10.002
SRR9715741	Leaf	10.610
SRR9715739	Root	0.073
SRR9715742	Root	0.147
SRR9715743	Root	0.119

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.599
SRR8749028	MeJA induced 9h	0.569
SRR8749029	MeJA induced 9h	1.396
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.264
SRR8400027	Control - Root	0.371