Gene detail

Gene detail information of Glyur000316s00018267.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26700.1	2.00E-94	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
NR	KHN27411.1	0	Protein kinase PINOID 2 [Glycine soja]
COG	YP_828049.1	7.00E-11	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q64FQ2\|PID2_ARATH	9.00E-123	Protein kinase PINOID 2
trEMBL	tr\|V7CC91\|V7CC91_PHAVU	7.00E-176	Uncharacterized protein {ECO:0000313\|EMBL:ESW26968.1}

Sequence

Transcript Sequence

>Glyur000316s00018267.1
ATGGCCACCGCCTGCAGAGATGAACCCGACTACGACAGCAGCAGCTCCTCGATCACCGTGCCGGAATCTACCCGGAGCTGGATGAGCAACCTCAGCTTCGGAAGCCGCCGTCGCCGGAGCTCCGTCTCNGTTTGTTCCACCTTCACTGACACATCTTCCTTCGCGAGTGGTTCCCACGCGAAGCCNCACAAGGCAAACCAGGCTGCATGGGAAGCCATGCGGCGTCTCCGAAGCGACAAAGGCCGTGTCGGCCTCGACCACTTCCGCCTCCTCCGGCGCCTCGGAAGCGGCGACATCGGNAATGTCTACCTCTGTCAAATAAGGAACCCCGTGGTGGGTCTCCCTCAATTTTATGCTGCGGAGACGCTTTTGGCGCTGGAGTATCTGCACATGATGGGAATAGTGTACAGGGACTTGAAGCCAGAGAATGTGTTGGTGAGGGAGGACGGGCACATTATGCTTTCCGATTTTGACCTTTCTCTCAAATGCGACGTCGTTCCGAAGCTGTTAAGGAGTGGGACCCGATTGGAAGAACGGAGCATCAAGAGCACAAAGAGATCCGCGCCTGCCTGCACTGCCCCCATGCAACCCGTGCTGTCCTGTTTCTCCAAGAAAAAGAAAGCCGCCACCGTGGAAACCGTTATAAGGGAGAACATTAATGTCGAGGAGGCCCAAGAGTTTGTTGGGCTTGGGCTTGATCCGGAGCTTGTGGCGGAGCCCATCGAAGCGAGGTCGAAGTCGTTTGTTGGGACCCACGAGTACTTGGCACCGGAAGTGATACTGGGACAGGGGCACGGGAGTGCGGTGGATTGGTGGACGTTTGGTGTGTTCCTCTACGAGATGCTGTACGGTAGAACACCCTTCAAGGGTGAGAACAATGAGAAGACACTCGTGAACATCCTCAAGCAACCNTTGACATTCCCTAGGATTGCGGTTAGCAGCAGCAACGAGTTTGAAGAGATGGTTAGAGTTCAGGACCTCATTAGCAAGCTGCTTGTGAAGAATCCAAACAAGAGGATTGGGAGTTGCATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTGAATTGGGCCTTGATTAGATCCGTTAGACCCCCTGAGGTCCCTTGTGATAAGAACAAGATTAGGAGTAGTAGGGTTTTGATGATGCCAAAGAAACTAAGCAAGACAGACAGGGATCAACCATTTCAGCTTAGTACCAGTACTCGTCATTTTGAATACTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	57948	59625	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018267.1	PF00069.20	Pkinase	116	163	1.30E-14
Glyur000316s00018267.1	PF00069.20	Pkinase	243	355	9.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.110
SRR1783600	control	0.081
SRR1783602	moderate drought stress	0.395
SRR1811619	moderate drought stress	0.300

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.465
DRR006520	Root Summer glycyrrhizin high producing strain	1.271
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.639
DRR006524	Root Summer glycyrrhizin low producing strain	0.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.704
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.703
SRR2868004	Drought Stress (root)	1.634
SRR2967015	Control (root)	1.874

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.682
SRR9715740	Leaf	1.049
SRR9715741	Leaf	0.779
SRR9715739	Root	0.509
SRR9715742	Root	0.690
SRR9715743	Root	1.067

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.373
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.046
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.271
SRR8400027	Control - Root	0.907