Gene detail

Gene detail information of Glyur000316s00018262

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17486.1	5.00E-61	PPPDE putative thiol peptidase family protein
NR	XP_007154966.1	1.25E-134	hypothetical protein PHAVU_003G161600g [Phaseolus vulgaris]
Swissprot	tr\|Q93VG8\|PPDEX_ARATH	7.00E-76	DeSI-like protein At4g17486
trEMBL	tr\|V7CC86\|V7CC86_PHAVU	5.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:ESW26963.1}

Sequence

Transcript Sequence

>Glyur000316s00018262.1
CAAAAATAGGCAACTGGGGAGGTGAAACTCAAAAACAAACCTCGCCGCAACACCAAATCTGTCTTTTGACTCAACAGTTACAACTAACAACACAGCACAGCACACAGCATCTCAAATTCATTCAATCAACCTCAAACTCTAATAAGGTTACTGTCTGTAACTCTGCGTGACATGAACATGGNCATGGATGGGTAGGAGATGGATCTGTGTTCTGTGAGGATCATCTCATCCTTCATGTCCATGGAGTGTGTTGTTTCTTTCGTCTTTTGGTGATTTCATTTTTAAGGTTGGGTTGCCCTGTTTGTTCCCCCAGAATTTAAAAAGAGCTATTTATTTATTATTCCATTCGTGGAAGAAAAAATGGGAGTGGAGAACGCCTCTAACTCCAATTCCACCTCACAATGCGATGAAGACGACACCAACAGCAAAATCAACAACACCCTTGTGGTNTTGAATGTCTACGATCTCACCCCAATCAATAATTACATGTANTGGTTTGGATTTGGGATCTTCCACTCCGGCATTGAAGTAGTTCATGGTAAGGAGTATGGATTTGGGGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAATTGCCCTGGATTCATATATAGATGTTCCATCACTTTGGGCCAAATAAATATGAGCCCTTCAGAGTTTCGGACATTTATTGAAAACATGGCTTCCGAATATCATGGGGATACTTATCACCTCATATCTAAGAACTGCAATCATTTTACAGATGATTTGTCATATAGGTTGACTGGAAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAGGCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGAAGATGAATTTGTCGAATCTCCCTCGACTACCACACCCACCGGGTCAACAGAAATAGACGATGAACAAGAAAAGCACCTTCTGTTACAACCAGCTGGAGCAGAGGATGTTACTTTTGTTAGAGAGGCCCGAGCAAAGTGAATGTGATAGGTTCAAGGTGAGAAAACACTTAGATAGTGCAGGCTGTTTTCAGTTGAATATCTCAACTTGATTTGCAGTGATTCTGTTTTTTCCATGGCTTTCTTTGTGCATTGTATTTGGTTCATTCATTGTAACTGAAGAATCCAAACCATATCTAATGATGTGTTTTTAAATTTATAAAGGTTTTTTTATGTACGGGGCTTTATTTATTTGTGTACTTTTTTTGGGGAAGGGAGCGGGAGAAGGGGATTGTTGGGGCTCTTAGTCTGTCATGTAAAATTGTAAATGACATCCACGTTTGTAAACTGTAAGTTATGAAATATTCTGGTAGATAGTGCATTTTCTTTGAGACATTTGTGTAAAAAAAATGTCTACAAGTTCGAATACGGGGTTCAAAATTGTTTGGATGAAGCTGCTATTTTCCTGTACAAGAGTAAAAGAAAGAACTGATCTCTTCAGAAAGTAGTGACTAGCAATGCTTTTCATACCAACTTTGGAGGAAACTCAAGAAGGTGACATGAGAAACTCGGAGGGTAGTTTGTTTGCCCTTACGATTTTCTGCTGACAGATGGTCGCAGCACACGAATTGGCTTTCAAGTTTCATAATTTATGTATTGCTTGTGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	33890	37936	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018262.1	PF05903.9	Peptidase_C97	29	161	1.20E-42
Glyur000316s00018262.2	PF05903.9	Peptidase_C97	29	155	1.80E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.457
SRR1783600	control	8.551
SRR1783602	moderate drought stress	10.021
SRR1811619	moderate drought stress	9.790

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.083
DRR006520	Root Summer glycyrrhizin high producing strain	9.902
DRR006521	Root Winter glycyrrhizin high producing strain	22.578
DRR006522	Root Winter glycyrrhizin high producing strain	22.273
DRR006523	Root Summer glycyrrhizin low producing strain	19.243
DRR006524	Root Summer glycyrrhizin low producing strain	19.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.247
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.528
SRR2868004	Drought Stress (root)	14.866
SRR2967015	Control (root)	18.158

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.253
SRR9715740	Leaf	5.425
SRR9715741	Leaf	6.383
SRR9715739	Root	6.869
SRR9715742	Root	7.371
SRR9715743	Root	7.612

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.953
SRR8749028	MeJA induced 9h	18.379
SRR8749029	MeJA induced 9h	17.341
SRR8749030	Uninduced	6.654
SRR8749031	Uninduced	3.446
SRR8749032	Uninduced	4.968

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.063
SRR8400027	Control - Root	20.353