Gene detail

Gene detail information of Glyur000316s00018261

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20050.1	2.00E-134	Protein kinase superfamily protein
NR	XP_007154965.1	0	hypothetical protein PHAVU_003G161500g [Phaseolus vulgaris]
COG	YP_001958461.1	7.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q94C25\|Y5005_ARATH	0	Probable receptor-like protein kinase At5g20050 (Precursor)
trEMBL	tr\|V7C9X7\|V7C9X7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26959.1}

Sequence

Transcript Sequence

>Glyur000316s00018261.1
ATGGAGGACAGGAAAGTGAACACGATCGCGGTTGTATCAGTGATAGCAGTGATAATCCTCATAATCGTAGCTCGTGTGTCATTGAAGCTCTCAAAGGCATTCTTCCTCATTTGCGGCGCCTCAATTGCGGTGATCCTCGCCGTCTTTTCCTGCGTCCTCATCAGGAACCGCTACAACCGCAGAAGAAGAGTATTAGAATCACAGTTGAAATCAGAAGGTAGAGAGCTTCGAATAGAGTACAGTTTCTTAAGGAAAGTTGCAGGTGTCCCAACAAGGTTCCGTTACAAGGAACTCGAAGAAGCAACGGACGGGTTTCAAGCACTGTTGGGAAAAGGTTCCTCTGCTTCCGTTTTCAAAGGCATTCTCAGCGACGGAACTTCGGTTGCAGTGAAACGAATCGACGCGGAGGAGCGTGGAGAGAGAGAGTTCAGATCAGAAGTCGCAGCCATCGCGAGTGTGCAACACGTGAACCTCGTGCGTCTGTTTGGTTATTGCAACGCTCCAAAGGCACCTAGGTACCTTGTCTATGAATATGTCCCAAACGGGTCTNTAGATTGTTGGATTTTCCCTTCGAGGGAAAATAGGACACGGCGTGGTGGGTGCTTGCCGTGGAATTCGAGGTATGGTGTTGCAATTGATGTTGCTAAAGGGTTGAGTTATCTTCACCATGATTGTAGATCAAGGGTGTTACACCTTGATGTGAAGCCAGAGAATATTCTCCTAGACGAGAATTACAAAGCTCTTGTTTCTGATTTTGGTCTTTCGAAGCTTGTGGGGAAGGACGAGAGCCAAGTCATGACAACAATAAGAGGAACAAGAGGGTACTTGGCACCTGAATGGCTCTTGGAGCGTGGGGTTTCTGAGAAAACAGATATCTATAGCTATGGAATGGTTCTGTTGGAGATAGTTGGAGGGAGAAGGAATGTTTCAAGGGTAGAAGATCCTAGGGACAAGTCAAGGACGAAATGGCAATTCTTCCCGAAGATTGTGAATGAGAAAGTGAGGGAAGGGAAATTGATGGAGGTTGTGGATCAGAGACTGTTAGTGGGTGGGGGTGTTGTTGATGAGAGTGAGGTGATCAGGTTGGTGTATATTGCTCTGTGGTGTATACAGGAGAAGCCCAGGTTGAGGCCCAGTATGGCCCAAGTGGTTGATATGCTTGAAGGTCGTGTGAGTGTTGATGAGCCACCGGGTACTAGAATGATTCTTGTGGATTTACTAGCTGTGGATGAAGACCCTGCTGATCATACTAATTTGGCGAGGTTGTTGAGCTCTGTGTCTAGCAATGTGGAATGTACAACATCTAATTACTCTTTAGGAACCACTGTTTTGTCTGGCAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	30947	32290	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018261.1	PF00069.20	Pkinase	107	384	2.00E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.876
SRR1783600	control	0.903
SRR1783602	moderate drought stress	0.708
SRR1811619	moderate drought stress	0.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.989
DRR006520	Root Summer glycyrrhizin high producing strain	2.874
DRR006521	Root Winter glycyrrhizin high producing strain	0.581
DRR006522	Root Winter glycyrrhizin high producing strain	0.537
DRR006523	Root Summer glycyrrhizin low producing strain	6.783
DRR006524	Root Summer glycyrrhizin low producing strain	7.511
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.757

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.071
SRR2868004	Drought Stress (root)	36.509
SRR2967015	Control (root)	49.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.155
SRR9715740	Leaf	10.412
SRR9715741	Leaf	32.996
SRR9715739	Root	16.543
SRR9715742	Root	27.328
SRR9715743	Root	24.354

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.756
SRR8749028	MeJA induced 9h	1.557
SRR8749029	MeJA induced 9h	1.570
SRR8749030	Uninduced	15.287
SRR8749031	Uninduced	3.744
SRR8749032	Uninduced	5.833

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.126
SRR8400027	Control - Root	15.769