Gene detail information of Glyur000315s00012787 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65880.1 | 0 | benzoyloxyglucosinolate 1 |
| NR | KHN24179.1 | 0 | Putative acyl-activating enzyme 12, peroxisomal [Glycine soja] |
| COG | YP_008375069.1 | 4.00E-178 | Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Cycloclasticus zancles 7-ME] |
| Swissprot | tr|Q9C8D4|AAE11_ARATH | 0 | Butyrate--CoA ligase AAE11, peroxisomal |
| trEMBL | tr|V7BQW4|V7BQW4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW18966.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00315 | 182593 | 185077 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000315s00012787.1 | PF00501.23 | AMP-binding | 32 | 421 | 3.20E-70 |
| Glyur000315s00012787.1 | PF13193.1 | AMP-binding_C | 430 | 513 | 5.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.110 |
| SRR1783600 | control | 0.096 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.107 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.054 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.499 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.169 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.902 |
| SRR2868004 | Drought Stress (root) | 6.990 |
| SRR2967015 | Control (root) | 4.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.843 |
| SRR9715740 | Leaf | 23.088 |
| SRR9715741 | Leaf | 18.591 |
| SRR9715739 | Root | 0.251 |
| SRR9715742 | Root | 3.898 |
| SRR9715743 | Root | 2.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.530 |
| SRR8749028 | MeJA induced 9h | 0.377 |
| SRR8749029 | MeJA induced 9h | 0.258 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.694 |
| SRR8400027 | Control - Root | 0.591 |