Gene detail

Gene detail information of Glyur000315s00012783

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65840.1	0	polyamine oxidase 4
NR	XP_004503087.1	0	PREDICTED: probable polyamine oxidase 4-like [Cicer arietinum]
COG	YP_007568558.1	2.00E-64	Amine oxidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprot	tr\|Q8H191\|PAO4_ARATH	0	Probable polyamine oxidase 4
trEMBL	tr\|G7J7X8\|G7J7X8_MEDTR	0	Flavin containing amine oxidase {ECO:0000313\|EMBL:AES70872.1}

Sequence

Transcript Sequence

>Glyur000315s00012783.1
GGAGGCCCAGTGGGAAGAAGCTCCGTGAAGTATAAATAGAGTGTTTGGCAATTTGGCAGGTAGGTATTATATCTCGTGCTACTTGCTCACAATTTGCGTTGATCCTCAAAATCAAAGTGGCGGTGCATCAATAATTCAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGCATTTCAATCTTCACCACAATAATTGTGCTGTGCGTGTGAGGGTTGGGGAGATCCAGAGAGATTCCATCCATCATCTTATGCAGAGTAGAGTCGTCGAAATTCCGGCGATCCCTNGTGGTGGTGGACGACGACACCGTTTTGATTCGATTAACCAAAAACACCTAACCTTCCCTTATGATCTGGCTTGAGAATCTGTGTTTCTCTTCTTACCTCAGCCGCTTCATTGCCGGCATCCTCCTCTTAATCTTCTGTAATTCCTTCCAGTTAGTCTCCAATTTCCCTGTTCCTATACACCCTTCAACTCTCGTTTAATCTTCAACCCCCCAATTCATTCATTCATTCCCATTGAATAATAATTCGACCCAATATTCATTCCTTCTTTGTTGTTGTTTCTCGCTCTCCACTCTCCAACTTTGACTGCCTCTATAATGGACCCTAAACTCTTTTTCTCCACCAATTTCCTCGATGGCACTATTCCATCACGCATTGAGAGCCAACAAAGACCTCNTCCTTCAGTTATTGTTATCGGTGCTGGAATATCAGGGATTGCTGCAGCACGTAATCTCTATGACGCATCTTTTAAGGTCACTGTACTGGAGTCACGGGACAGGCTTGGTGGTCGCATTCATACTGACTACTCATTTGGTTGTCCAGTTGACATGGGAGCCTCATGGCTACATGGAGTTTGTAATGAGAATCCCTTGGCTCCATTGATACGAAGCCTGGGGCTTAAATTATATCGAACCAGTGGTGATAACTCTGTCTTATATGACCATGATTTGGAAAGTTATATGCTTTTTAACATTGATGGTCATCAAGTCCCACAGCAGATTGTCATTGAAGTTGGAGACACTTTCAAGAGAATTCTGGAAGAGACAGGGAAAGTGAGGGATGAGCNTCCTGAGGACATTTCAGTTTCCCAAGCAATTTCAATTGTGCTAGATAGGCATCCACAACTAAGGCAACAAGGACTTGCCCATGAAGTGCTGCAATGGTATATATGCAGAATGGAAGCTTGGTTTGCTGCTGATGCAGATATGATTTCACTGAAAACATGGGATCAGGCAAGTGCATTATATAACATGAAGGATATAAAATTTTCTTCTGCCTCTACACTTCAACGACCTGAACATGTTCTCTCTGGTGGTCATGGACTCATGGTGCAAGGATATGATCCTATTATAAAATCTCTTGCAAAAGATATTGATATACGCTTGAACCACAGGGTGACCAAGATATCCAGTGGCTACAATAAAGTAATGGTTACCGTGGAGGGTGGTAGGAACTTTGTTGCCGATGCTGCTATCATAACTGTCCCTCTTGGAATCCTAAAAGCCAATTTAATTGAGTTTGAACCAAAACTTCCTGATTGGAAGGTTTCTGCAATTTCAGATCTTGGTGTAGGCAATGAAAATAAAGTTGCCCTAAGATTTGACAAGGTGTTTTGGCCCAATGTAGAACTCCTGGGCGTTGTTGCTCCCAGCTCTTATGCCTGTGGCTATTTTCTCAATCTCCACAAAGCAACAGGCCATCCAATTCTTGTTTATATGGCAGCTGGCAGGTTTGCTTATGACCTTGAGAAGCTATCTGATGAGTCAGCTGCAAATTTTGTAATGCTACAGCTCAAGAAGATGTTTCCTGATGCTTGTGAGCCAGTTCAGTATCTTGTGTCCCGTTGGGGAACAGATCCAAACTCTCTTGGTTGTTACTCGTATGATTTGGTTGGAAAACCACTTGATGTGTATGACAAGCTTCGTGCACCCTTAGGTAATCTCTTCTTTGGTGGGGAAGCCGTGAGCTTGGACAACCAGGGATCTGTGCATGGAGCTTACTCTGCTGGGGTTATGGCTGCTGAAAATTGTCAGAGTTATCTTTTGGAGGAACAAGGCCACTTGGAAAACCCGCCTCTAGTTTCTGTTAGGCATGAAATAATCGAAAGTACTATACCTCTTCAGATCTCCAGGATGTAGATTGTGACTTGTGCTCATTTGCTTTCGAAGATGAAAGCATTTCTTTAAATTTGCACGTCATAATGGCAAAATATATAGTGGCCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	163850	168819	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17839	PAO4, PAO3, PAO2	EC:1.5.3.17 1.5.3.-	Arginine and proline metabolism	map00330
			beta-Alanine metabolism	map00410

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012783.1	PF01593.19	Amino_oxidase	37	219	6.40E-25
Glyur000315s00012783.1	PF01593.19	Amino_oxidase	237	476	1.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.489
SRR1783600	control	18.511
SRR1783602	moderate drought stress	12.162
SRR1811619	moderate drought stress	12.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.939
DRR006520	Root Summer glycyrrhizin high producing strain	12.826
DRR006521	Root Winter glycyrrhizin high producing strain	5.656
DRR006522	Root Winter glycyrrhizin high producing strain	5.482
DRR006523	Root Summer glycyrrhizin low producing strain	20.314
DRR006524	Root Summer glycyrrhizin low producing strain	20.007
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.870
SRR2868004	Drought Stress (root)	117.510
SRR2967015	Control (root)	96.383

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	62.591
SRR9715740	Leaf	29.664
SRR9715741	Leaf	56.631
SRR9715739	Root	13.776
SRR9715742	Root	21.939
SRR9715743	Root	22.053

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.219
SRR8749028	MeJA induced 9h	37.069
SRR8749029	MeJA induced 9h	32.818
SRR8749030	Uninduced	46.466
SRR8749031	Uninduced	10.534
SRR8749032	Uninduced	14.969

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.010
SRR8400027	Control - Root	45.154