Gene detail information of Glyur000315s00012779 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17200.1 | 7.00E-46 | Uncharacterised protein family (UPF0497) |
| NR | XP_003553094.1 | 1.04E-80 | PREDICTED: CASP-like protein 10-like [Glycine max] |
| Swissprot | tr|C6TCJ2|CSPLA_SOYBN | 8.00E-83 | CASP-like protein 2A2 |
| trEMBL | tr|I1MZJ4|I1MZJ4_SOYBN | 4.00E-81 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00315 | 148688 | 149913 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000315s00012779.1 | PF04535.7 | DUF588 | 56 | 186 | 1.00E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.028 |
| SRR1783600 | control | 7.745 |
| SRR1783602 | moderate drought stress | 8.671 |
| SRR1811619 | moderate drought stress | 7.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.005 |
| SRR9715740 | Leaf | 0.092 |
| SRR9715741 | Leaf | 0.725 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.943 |
| SRR9715743 | Root | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.575 |
| SRR8749028 | MeJA induced 9h | 0.092 |
| SRR8749029 | MeJA induced 9h | 0.413 |
| SRR8749030 | Uninduced | 0.087 |
| SRR8749031 | Uninduced | 0.108 |
| SRR8749032 | Uninduced | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.895 |
| SRR8400027 | Control - Root | 0.664 |