Gene detail

Gene detail information of Glyur000315s00012778.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08430.1	2.00E-70	SWIB/MDM2 domain;Plus-3;GYF
NR	XP_003537424.2	0	PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FT92\|Y5843_ARATH	9.00E-81	Uncharacterized protein At5g08430
trEMBL	tr\|K7LRF3\|K7LRF3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G33015.6}

Sequence

Transcript Sequence

>Glyur000315s00012778.1
ATGGGGAAAAAGAACAAAAGGAGGAAGGAAGAGAAAGCCGAGGACTGGTGCTTCGTGTGTAAGGATGGAGGGTTAATGAGGGTGTGTGATTTCAGGGATTGCCTTAAAGCTTATCATCCTTGTTGCGTGGACAAAGATGATTCCTTTTTGAAGAATGACAGTAATTGGATTTGTGCTTCCCATTCTTGCTTCCTATGCCGTAGACCATCAAAGTTTAAGTGCTTTTGCTGCCCAAAAGCTGTTTGTGGAAACTGCTATGCTGCTGAATTTGCTTTAGTTAAAGGAAACAAAGGGTTTTGCCAACACTGCTCAAAACTTGCATTGCTAATTGAAGAAAATGCTGATGCGGATTCTGATGGGGGAAAGGTAGATTTCAAAGATCGAGAGACATATGAATGCTTATTTGCAGAATANTATGACATTATCAAAGTAAAAGAAGGGCTGAGTTCTCTGCACGTTCATTCTGCCTATAACTTCTTTAAGAATGGCAAAAGCAAGTGTGACTTGGATCTATGTGAAATAGATGAGGGGGAAGATGATACTGGAGAATCTGAAGATGAAGGTAACTCTGTAGATTCTGATCATGATGACCTGAATGACACAGGAGTAGTTAAATCTGTGAGGAAAAAGAAGAAGTGCATGAGAAAGCTAAAATCAATAAAAGGAAAGGTGAAAGATAAGAAAAAGGAGTTTATTGGATGGGGTTCAAGAAGTCTCATAGAATTTCTTAAATATATTGGTAGAGACACTAGCAGAGAATTTTCTGAACATGATGTTGCTTCGATCATTACTGAGTACTGCAAAGAAAACAAGCTTTTTGACCCCAAGAANAAGAGAAAGGTAATTTGTGACGCACAATTAAGGTCTTTACTAGGGAGGAAATCAGTGAATAGAAACAACATTCAGAACCTTCTGGCACCACATTTTGCAGAGAATTTTGAGGAAATGGATGATATNACTAGTAGTTCAGAAGATAGGGATGACAACGAGCCATTGAAATCTTCAAGGCAGAGAAAATTGAACTCAAGTACAATATCTTGTAAGAACCTAGTTTCTGAAGAGTGTCANAGCTTTTTTGCAGCAATAGTTAGTTCAAACCTCAAGCTTGTCTACTTGAAGAGGAGCTCAATTGAGGAGCTTTCGAAGCAACCAGAAACTTTTGATAGNAAAGTGTTGGGAAGTTTTGTGCGGACCAAATCTGACCCAAATGACTATTTACAGAAGAATTCCCATCTGCTCGTACAAGTAGTAGGAATAAATAGATCTTCAAAGAATGATGAAATCAACAAAGAAATTCTGCTTCGGCTTTCTAATGTGCCAAAAGATGTCCCTATTTGCAAGATTTCAGACGATGACTTTGCTGAGGAAGAATGTGAAGATTTGTATCAGAGAATGAGAAATGGTCTGCTCAAACAGCCGACTGTACTGGAGCTGGAGCAGAAAGCTAGAACTCTTCATGAAGATATAATAAAGCATTACATAAACCAAAAACGGAAGCTTGAGACTCCATCAGAACAATCACGTTTATTGAGTGACATTCCAAAAGTAATTCCTGAAATAGTTGNTACCAATCTGTCACCAGAGGATTCCTCAAGAGAGCAAAATGATTTGCCAGAATTAGCCATTGGAGAGACTCGTAATTCTGTTGGACGTTATTCCAATCAAGATCCAAAATCTCCGGTGGAAAAAAACCAAGCCTTTCCTGCCTCTGATGAACAATTGTTTTCCCAAAGTGCTTCCCAAGACAAGGGTACTTCTCAAAGAAACCTGATTCAGTCAACCTCAAAAGCGAGGCAAGATGATCACAAGGCTACACCCTTTGAAGAATTAAACTCTAAACATCAGACCTTCAATCCAGAAAAATGCTGCTTGCCTCAACCAAAGAATATTGAATCTGGTTCTGGTATGGATGGCAGAAGTGTGAGTGCTACCACAAATGCCAATCAGACAACAGAGACCATTTCAGTTGCAGATCCTACTGAGGCAATTGTCAATGACAAACAGGGTACAAACATCTCAGCTATTCCAGTGGAACAAGTAGTTGACATTTCAACGGCAGCTGTTATCGTTTTAAGTGACAGCGATGAAGAGGATACGAGTAGACGAAAGGCGGTGGAGAATCCAGATATTAATATTTGGCATTGTTTGGGTCCTTATGGNGAAAGAAGAGGGCCCTATTCAATGTCTGTACTCAAACGTTGGAGTGAATCTGCCTCTTCTCCCTTAGAATTCAAGGTCTGGAAGACAGGTCAGAGTGAAAAAGAGGCAGTACTTCTCACAGATGCACTTAGCAGAATTTTTCCCAGTATGTAGATAAATAGAAAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	134351	146376	-

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0016570 histone modification

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012778.1	PF02201.13	SWIB	241	309	9.60E-15
Glyur000315s00012778.1	PF03126.13	Plus-3	366	467	2.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.017
SRR1783600	control	1.930
SRR1783602	moderate drought stress	1.382
SRR1811619	moderate drought stress	1.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.797
DRR006520	Root Summer glycyrrhizin high producing strain	1.518
DRR006521	Root Winter glycyrrhizin high producing strain	0.084
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	0.520
DRR006524	Root Summer glycyrrhizin low producing strain	0.474
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.688
SRR2868004	Drought Stress (root)	1.568
SRR2967015	Control (root)	1.786

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.705
SRR9715740	Leaf	0.161
SRR9715741	Leaf	0.402
SRR9715739	Root	0.016
SRR9715742	Root	0.952
SRR9715743	Root	0.508

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.444
SRR8749028	MeJA induced 9h	0.923
SRR8749029	MeJA induced 9h	0.738
SRR8749030	Uninduced	0.186
SRR8749031	Uninduced	0.174
SRR8749032	Uninduced	0.283

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.934
SRR8400027	Control - Root	4.678