Gene detail

Gene detail information of Glyur000315s00012774

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65780.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	AES70859.2	0	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]
COG	NP_214409.1	8.00E-31	DNA helicase [Aquifex aeolicus VF5]
Swissprot	tr\|B6SFA4\|MAA3_ARATH	3.00E-39	Probable helicase MAGATAMA 3
trEMBL	tr\|G7J7W5\|G7J7W5_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:AES70859.2}

Sequence

Transcript Sequence

>Glyur000315s00012774.1
AGTCCAAGTGATGGAAAGGGGTAAAGATTTGCTGAGATTGGTATTTTCATGGTCACTTGAGGATATACTCAACGATGATCTTTATAGAGACAGGGTGAAGCAAATTCCAACGACATTCTTGTCAGGATGTCACTATCTGAAATCATTTACTTTTCCTCTTATTGAGGAAATTCGTACAGAGTTATGCTCAAGCATCAAGATGGTGTCAGAAGCTCCAGCATGTGAAATAACTGATATTGATTTTTGCGAAGATTACAATCCTCCATATGATTTGTTATACAATATTGAAATGAAAACAATAGTGGATAGTGACCAAAATGGGGACATTTTTGAGCCTGAGCCTGGACAGCTCTTTGCTTTGACTGATAGGAGGCCGACATGCATCAATGATTTGAATAAGCCTGGAAATTCCTATATTATTGCTTCAATTAAAAGGGTAAGAAAGAAACATAAAGATGAAGATGTTTACAAGGTTCAAATACTAACCTCAAAGCCAATTGAATTAGAACAGTACTTGCAAAAGGATGACACATATATATATGGTTTTGCTGTTTATCTTTGTAACTTGACTACAAATAGTCGAATATGGAATGCACTGAACTCAGATCCAGATGGTCCAGGGATCTATATCATCAAGCAACTGCTCCAACCTGATTCTGCTGTTGGAGAAGACTGTGCGCAATGTTTCTCTAGTGAAAGATACGCTATTGATGTATCAAATCTTGGTGCTGTCATTCGCTCATTTGATTTGAACAAAGCTCAAGAAGAGGGAGTTTTAAGTTGTATAGCTGCAAGGGAATGTTCTCATAAGAATACAGTGAAATTGATATGGGGCCCTCCAGGGACAGGGAAAACTAAAACGGTTGGTTCATTATTATTTGCCCTCCTCAAAAGGAAATGCAGAACACTTACTTGTGCCCCAACTAATGTGGCAGTACTGGAAGTGACAACTCGGTTTCTTAGGCTAGTAATGGGGTCTCTTGATTATCTCACTTATGGTCTTGGAGACATAGTATTATTTGGTAACAGAAAGNGGATGAAGATTGACAATCATGATGATCTTCTTGATATATTTCTTGATTACCGTGCAAATGAACTTTCCAAGTGCTTTGCACCTTTATCTGGTTGGAAACATAATTTAGAACTGATGATATGGTTACTTGAAAACCCTGAAAAACAGTATCATGAATATTTAAACAGTGAGGTAAAGAGGGATTATGGGATAGATGATGATGACTGTTTGAAAGAAGAGAAGGCACTACTTGTAATTGCAAGTCAACAAACAAATCAGGAGAAAAGGGATATCTATTCCCAGGATCCAAAAAATTGTAAGCAAAATGAGTGGAAGAGGATAGTTAATAAAACTTTGAGAGAAAACAGGTTGTCTTTTAAGGAGAGAAACAAAAGTAAATATGAAAAACAAGAGAAGAAGGATTTTCCTTTTCATGTGAACAGGAAAAAAAGATTGACATTTCGTGAGTTTGTCACGGAAAAATTGGATTCCATCATGGGGCGGATGAGAACATTCGCTGTGAATATGTGTACTCATTTGCCAACTAATTTTATTTCATTAAGAGTGGTGAAAAGTTTATTTGAATGTCTTGATTGGCTCAAAGTCCTTGCAACGGTGCTATCAAACAACTCCATTACCGATCAAGAATTTAAACTTGGCCTTACTACATCTTATATTGATGAAAGTAGGCTTAGTTGTTGTACTTGGCAGTATAAACTGGGTATGACCATGAAAGAATGCCTTAAAAGACTGAAATCTCTTCAAGATTCATTGATTCTTCCTGATTTTTTTGATGAATATTCAATTAAAAGCTTTTGTTTCAAAAGATCTCGTATGATATTTTGTACTGCTTCAAGCTCTGCTAGATTGCATGCAGAAGGACTTGATAGACTAGAAATGTTAGTTGTTGATGAAGCTGCCCAACTCAAAGAATGTGAGTCAAATATACCTTTACAACTTCCTGGTCTTCGCCATGTTGTACTTATTGGAGATGAGAAGCAATTGCCTGCACTAGTCAAAAGCGAGATTTCTGACAAGGCAGGATTTGGGAGAAGTTTGTTTGAAAGGCTGGTTCTTTTGGGTCATAAAAAACACCTTCTCAATGTTCAATACAGAATGCATCCATCCATTAGCTTGTTTCCAAATATGGAGTTCTATGACAATCAAATTTTGGATTCTCCAAGTGTCAAAGAGAGAAGCCATGAGAAACATTTTCTACCTGGAGATATGTTTAAGTTCTACTCCTTCATAGATGTTGCTTTTGGACAAGATGAACTGGATGAAGGGAATAGCCGAAAAAATATGGTGGAAGTAGCTGTGGTATCTGAGATTGTTCTTGACCTTTATAAAGAATCAGTTTCCAGAAAGCAGGCTGTTAGTGTTGGTGTTATATCGCCATATAAAGCTCAAGTTGTCGCAATCCAAGATGCACTTGGAAAAAGGTTTGGTAGTGACATTAATAATGGCTTTTCTGTGAAGGTTTCCACTGTTGATGGTTTCCAAGGTGGCGAAGAGGATGTGATAATAATATCCACGGTTGGTAGGTTGCCTAGTCTGCTCAACCCCCAAGTCACCATGGTTGATGTTGGTTCATGCTTCCTTGCCCCCCTCATCGTGGCATCCACAGGGGACATCATCTTTCCCTCAGTTTCTACTTCCCCTTTGTGGCCCAAAAGGCATTGCCTTTGGATAATAGGTAATGGTACAACTTTGATGAATAGTGGCTCCATTTGGGAGAGATTAGTCCATGATACTATGGCTCGAGGGTGTTATCACAATGCTGATGAGGATGAGAGGTTATCTCATGTTATTGCAAATGCTATGATTGAGCTTGGTCAAGTTGTTGATCTACTGAATATGAATTCTCTGATCTTTAGAAAAGCAAGGTGCAAGGTTGACCTCAAGGAAAGATTTTTTACCTCTATGGCAAGAATTAAGAGCACTGAGGTTTGCAAGAAAATATGTTCCCTGCTGATGCAACTTTCAAGTGGGCAGCATCAGCCTCACCAAGAGACAAATATTGGAGTTTTGGATAGTACTTCTCTAATGTTGGAGCTTTATAAGGTCAATGAGTCGCTTTATCTTGTATGGACCATAGACATCCTTGAGGAAAACTCAAATTATGTTCAGATTTTGAACATTTGGGACGTTTTGCCGTTGTCTGAGGTATCCAAGATGGTGAGGGATGTTGACATCTCTTACTGGAATTACTGCGTTGATATTCTTAGAAGTTGCAATATCAGGTCTTCTGAAGGGTATAATTCTACTACTAATTATCATATACCTNGAAGCTTTGGTCTGGAAAGCAAATCTAAAATTAAGTTTGGAAAAGCATCTGCTGCAACTGGAGTCTGGAACTGCAAGCCTTGCCTAAGAATTGATCTGGATCAGGTTCAGTCTATGATTTCAACTGGGTATGGCAAGGAAGGAGCAAAATTGGCTTTTGGGGGTGTCTTTTGGGAGCCAATGATGGAGAGGAGTTGTAATGCCATAGGGAAGGATGTTGATCTTGCAAGTTTGGTAGAAACTGTATTCTCTTGGACTCTCAAGGATGTTCTCAACGAAAACCTCTGCAAGCACAAGGTGAGGAAGATCCCACTGACATTCATGTCAACAAAAGATTACATGAGTTACTTCATTCCTTCATTGATTGAGGAAACTCACTGTGACCTGTCTTCAAGCTTGTACGGCGTGTCTAGAGCTCCCTTTTGTGAAATATCGACCGTTGAACGCGATTCGTCGAAAAGCTTCATACCTACCAAGAACTTTACTGACAAGATCTCAATTCTGTCTTCAAAATGCTTTGGCATGGAGATTGAATCTAGCTTGAGGTTGAGGAGCAACAAAGCACCAAAGCTTTATGCTGTCTATCTTTTGAACCTGANAACAAATATTCGTGTTTGGAAAGCTTTGAACTCAGAGCTGGAGGGTGCAAACATGAGCATGATTAAAAAGGTGCTGCAAGCTGATTCAAATGTAGTAGTTATGAAGGAAATGTGTCTGCTCTATTTAATAACCAATTCATGCTTGTTTTATATTTTACAGAATGGAGAAAACTGTCAACTTTGCTTTTCTGGGGAAAACCAGATTGCAGCTTCTTCTAGAGTACAAGNCATAGTCCAGTCTCAGAATCTGAATGAATCCCAAAAAGATGCAGTTTTAAGCTGTGTTGCCGTGAGGGAATGTCATCATAATGAAACTGTCAAACTTATTTGGGGCCCACCAGGGACTGGCAAAACAAAGACAGTGGCTTCCTTGTTATTTTCCCTGCTCAAGTTAAAAACCAGAACACTAACATGTGCTCCAACTAATACTGCAGTGTTGGAAGTGGCTGCTCGCCTGCAGAATTTAGTTAAGGAGTCACTTGAGCATGATATCNACACATATGGCTTTGGTGACATAGTGGTATTCGGTAACAAATCTCGGATGAAAGTAGGCTGTTATCAGGGCCTCCAGGCCGTCTTTCTCGATCATCGTGTTGATGAACTTGTGAAGTGTTTTTCTCCATTGACTGGATGGAAACATTACTTAGAATCAATGATCGAGTTCCTTGAGGACCCTGCAAAGCAATATGGTATGTATAAGCTTGGTGTGGATGATGAGGAAGAAGATGATCCTATGTCATTAGAAGAATTTGCAAAGCAGAACTACAGTTACATCGAACTTGTATATCATTCATACAAGCAACACGAGAAGAATGNTGATCCTCTGACTTTAGAACAATTTGTGAAGAAGAAATACACTCACATTGAAGAGAAATACCTTTCATATANGGATAATAGAAAGGAAAGTGTCATGACATTGGAACAATTTGTTAAGCAGAGATTTGGTTTCATTGGAGAGAAGCTCAAGGAATACATGCAAACCTTGTACACACACCTGCCAACATCTTTCATTCCATTTGAGGAGATGAAGAAAATGCTAGTAGTTCTTGATTTACTAAGATCTATTGAAAGCTCCTTGAGTAAAGCCAAGTTGAAGCAAGCTCTCGATGANGGTGAAGACGGAGAAAACATTCTTGACTGCCTTGGAAGGTTAAGCATCAAAAGAGAAGAGTGCCTTATCTTACTAAGATCACTTCTTCAGACAATTTCACTTCCAAACCNTACTGAAAGATATGGTATAGAAAAACTTTGCTTGATGAATGCAAGCCTGATCTTCTGTACTGCAGCAAGTTCTACTAAACTCTTCACAGAAGGAATGACACCAGTACAATTTTTAGTTATTGATGAAGCAGCCCAGCTAAAAGAATGTGAGTCAGCCATTCCATTGCAGCTGCCAGGCCTCCACCATGCTGTTCTCATAGGCGATGAGAGACAACTTCCTGCGGTGGTCAAAAGCAAGGCTACTGAAGAGGCTGAATATGGAAGAAGTTTGTTCGAGAGGCTGGTATTGTTGGGATACAAGAAGCATCTGCTTAATATTCAGTATAGAATGCATCCATCCATCAGCTCATTCCCAAATAAGGAGTTCTATGAGGAGCAACTTTCTGATGCCCCCTTTGTCAGAGAAATGAGCTATAATAGGCGTTTCCTTGAAGGAAAAATGTATGCTTCTTATTCTTATATAAACATAGCTAAGGGTAAAGAGCAAACTGGTCGTGGACACAGTTTCAAGAACATGGTTGAGGCTGCTGCTATCTCCAAGATTATTGAAAGCCTTCAAAAAGGTACGCGAATTGAAAAAATTAAGCAGTACATTTCTGTTTCTGATCCTGACTTCTCTGTCAGTGTTCGTTCCATTGATGGCTTTCAAGGTGGTGAAAAAGATATAATAATAATCTCCACCGTGAGATCTAATGGGAATGCAAAAGTGGGTTTTCTTTCCAATAGACAGAGAGCAAATGTGGCACTGACAAGGGCTAGACATTGCCTTTGGATATTAGGGAATGCAACAACTTTAATAGACAGTGACTCTGTATGGACAAAACTAGTCCTTGATGCTAAGGAAAGTGGGTGTTTCCATGAAGCCGATGAGGACAGGGAAGTGGCTGAGGCTATTGAAGATGCCTTGCTTGAGATTGAACTCCTTGACGAATTTGAGTCACCATTTAAGAGACTTAGTCTAAAAGATAAATCAGAGGCAACTGCTACCACCTCCAGAGTTTCTTTCGCGGGCAGGCCATGGAAACAAAGGTGGTGAAGAATGGGAATATATAGAAAGCACCCCTGACCCGGTGAAACAGTACGAGCTAAAATAGTTNTTGCATGAATACGGTGTAACGTGTCCTTTTACATCATATAAGATATTTGTTGCCGAATCCAAGGCTTTGATCCAGTTTGCTGCCATAATACGAAATCTAAAGTATTGCACTGTTGAAGAGTGAAGACTGTTTGTATCAAAACAAAAAAAGAGTGAAGACTGCGGGAAGACGACAGGGTGTGCCAATCCCGTGGACATTTAATCTC

Protein Sequence

>Glyur000315s00012774.1
MERGKDLLRLVFSWSLEDILNDDLYRDRVKQIPTTFLSGCHYLKSFTFPLIEEIRTELCSSIKMVSEAPACEITDIDFCEDYNPPYDLLYNIEMKTIVDSDQNGDIFEPEPGQLFALTDRRPTCINDLNKPGNSYIIASIKRVRKKHKDEDVYKVQILTSKPIELEQYLQKDDTYIYGFAVYLCNLTTNSRIWNALNSDPDGPGIYIIKQLLQPDSAVGEDCAQCFSSERYAIDVSNLGAVIRSFDLNKAQEEGVLSCIAARECSHKNTVKLIWGPPGTGKTKTVGSLLFALLKRKCRTLTCAPTNVAVLEVTTRFLRLVMGSLDYLTYGLGDIVLFGNRKXMKIDNHDDLLDIFLDYRANELSKCFAPLSGWKHNLELMIWLLENPEKQYHEYLNSEVKRDYGIDDDDCLKEEKALLVIASQQTNQEKRDIYSQDPKNCKQNEWKRIVNKTLRENRLSFKERNKSKYEKQEKKDFPFHVNRKKRLTFREFVTEKLDSIMGRMRTFAVNMCTHLPTNFISLRVVKSLFECLDWLKVLATVLSNNSITDQEFKLGLTTSYIDESRLSCCTWQYKLGMTMKECLKRLKSLQDSLILPDFFDEYSIKSFCFKRSRMIFCTASSSARLHAEGLDRLEMLVVDEAAQLKECESNIPLQLPGLRHVVLIGDEKQLPALVKSEISDKAGFGRSLFERLVLLGHKKHLLNVQYRMHPSISLFPNMEFYDNQILDSPSVKERSHEKHFLPGDMFKFYSFIDVAFGQDELDEGNSRKNMVEVAVVSEIVLDLYKESVSRKQAVSVGVISPYKAQVVAIQDALGKRFGSDINNGFSVKVSTVDGFQGGEEDVIIISTVGRLPSLLNPQVTMVDVGSCFLAPLIVASTGDIIFPSVSTSPLWPKRHCLWIIGNGTTLMNSGSIWERLVHDTMARGCYHNADEDERLSHVIANAMIELGQVVDLLNMNSLIFRKARCKVDLKERFFTSMARIKSTEVCKKICSLLMQLSSGQHQPHQETNIGVLDSTSLMLELYKVNESLYLVWTIDILEENSNYVQILNIWDVLPLSEVSKMVRDVDISYWNYCVDILRSCNIRSSEGYNSTTNYHIPXSFGLESKSKIKFGKASAATGVWNCKPCLRIDLDQVQSMISTGYGKEGAKLAFGGVFWEPMMERSCNAIGKDVDLASLVETVFSWTLKDVLNENLCKHKVRKIPLTFMSTKDYMSYFIPSLIEETHCDLSSSLYGVSRAPFCEISTVERDSSKSFIPTKNFTDKISILSSKCFGMEIESSLRLRSNKAPKLYAVYLLNLXTNIRVWKALNSELEGANMSMIKKVLQADSNVVVMKEMCLLYLITNSCLFYILQNGENCQLCFSGENQIAASSRVQXIVQSQNLNESQKDAVLSCVAVRECHHNETVKLIWGPPGTGKTKTVASLLFSLLKLKTRTLTCAPTNTAVLEVAARLQNLVKESLEHDIXTYGFGDIVVFGNKSRMKVGCYQGLQAVFLDHRVDELVKCFSPLTGWKHYLESMIEFLEDPAKQYGMYKLGVDDEEEDDPMSLEEFAKQNYSYIELVYHSYKQHEKNXDPLTLEQFVKKKYTHIEEKYLSYXDNRKESVMTLEQFVKQRFGFIGEKLKEYMQTLYTHLPTSFIPFEEMKKMLVVLDLLRSIESSLSKAKLKQALDXGEDGENILDCLGRLSIKREECLILLRSLLQTISLPNXTERYGIEKLCLMNASLIFCTAASSTKLFTEGMTPVQFLVIDEAAQLKECESAIPLQLPGLHHAVLIGDERQLPAVVKSKATEEAEYGRSLFERLVLLGYKKHLLNIQYRMHPSISSFPNKEFYEEQLSDAPFVREMSYNRRFLEGKMYASYSYINIAKGKEQTGRGHSFKNMVEAAAISKIIESLQKGTRIEKIKQYISVSDPDFSVSVRSIDGFQGGEKDIIIISTVRSNGNAKVGFLSNRQRANVALTRARHCLWILGNATTLIDSDSVWTKLVLDAKESGCFHEADEDREVAEAIEDALLEIELLDEFESPFKRLSLKDKSEATATTSRVSFAGRPWKQRW

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	116189	130119	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012774.1	PF13086.1	AAA_11	247	676	6.70E-35
Glyur000315s00012774.1	PF13087.1	AAA_12	684	847	6.00E-40
Glyur000315s00012774.1	PF13086.1	AAA_11	1378	1782	4.00E-36
Glyur000315s00012774.1	PF13087.1	AAA_12	1789	1965	1.00E-43
Glyur000315s00012774.2	PF13086.1	AAA_11	247	676	6.70E-35
Glyur000315s00012774.2	PF13087.1	AAA_12	684	847	6.00E-40
Glyur000315s00012774.2	PF13086.1	AAA_11	1355	1759	4.00E-36
Glyur000315s00012774.2	PF13087.1	AAA_12	1766	1963	5.10E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.420
SRR1783600	control	3.508
SRR1783602	moderate drought stress	2.755
SRR1811619	moderate drought stress	2.797

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.636
DRR006520	Root Summer glycyrrhizin high producing strain	2.559
DRR006521	Root Winter glycyrrhizin high producing strain	0.525
DRR006522	Root Winter glycyrrhizin high producing strain	0.467
DRR006523	Root Summer glycyrrhizin low producing strain	2.469
DRR006524	Root Summer glycyrrhizin low producing strain	2.571
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.470
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.403

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.816
SRR2868004	Drought Stress (root)	1.756
SRR2967015	Control (root)	1.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.469
SRR9715740	Leaf	0.644
SRR9715741	Leaf	0.799
SRR9715739	Root	0.220
SRR9715742	Root	3.119
SRR9715743	Root	2.461

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.297
SRR8749028	MeJA induced 9h	1.072
SRR8749029	MeJA induced 9h	0.547
SRR8749030	Uninduced	0.144
SRR8749031	Uninduced	0.095
SRR8749032	Uninduced	0.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.486
SRR8400027	Control - Root	2.933