Gene detail information of Glyur000315s00012772 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12180.1 | 9.00E-07 | Cornichon family protein |
| NR | KHN26355.1 | 1.01E-12 | Protein cornichon like 1 [Glycine soja] |
| Swissprot | tr|Q3EDD7|CNIH2_ARATH | 3.00E-08 | Probable protein cornichon homolog 2 |
| trEMBL | tr|K7KF02|K7KF02_SOYBN | 1.00E-14 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G29730.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00315 | 109053 | 109953 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000315s00012772.1 | PF03311.9 | Cornichon | 19 | 77 | 6.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.079 |
| SRR1783600 | control | 2.198 |
| SRR1783602 | moderate drought stress | 4.876 |
| SRR1811619 | moderate drought stress | 5.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.767 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.174 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.872 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.846 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.653 |
| SRR2868004 | Drought Stress (root) | 1.151 |
| SRR2967015 | Control (root) | 0.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.048 |
| SRR9715740 | Leaf | 1.267 |
| SRR9715741 | Leaf | 2.722 |
| SRR9715739 | Root | 0.536 |
| SRR9715742 | Root | 3.280 |
| SRR9715743 | Root | 2.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.080 |
| SRR8749028 | MeJA induced 9h | 0.452 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.059 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.407 |
| SRR8400027 | Control - Root | 9.193 |