Gene detail

Gene detail information of Glyur000315s00012763

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62130.1	2.00E-110	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_004495860.1	5.87E-161	PREDICTED: isopenicillin N epimerase-like [Cicer arietinum]
COG	YP_007101293.1	5.00E-34	Isopenicillin-N epimerase [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q9M1R1\|LCYD1_ARATH	6.00E-135	L-cysteine desulfhydrase
trEMBL	tr\|G7IBQ9\|G7IBQ9_MEDTR	1.00E-155	Isopenicillin N epimerase-like protein {ECO:0000313\|EMBL:AES61560.1}

Sequence

Transcript Sequence

>Glyur000315s00012763.1
ATGTCAAGTAGTAGAGCCATCCTCCGCCACTCACTCACTGACATTGCACCCTATCCATCCATCCACGAATGCTCACGCTTCCCAAAAACAAAAACCCTAACACCTAACCCCCTTCCAAGCCNTGGACAACGACGACCCTCGAAACGGCGCCGTCGATGCCACCGAACAGAACAACCGCACGCCAAAGAAACCGAGGCTGACCCCCCCATTTCCGAACCCGAGATCCGCCAGGAGTTCTCGTACCACAAGCCCGGTGTCACACGGATCAACAACGGNAGCTTCGGCAGCTGCCCCCGCTCCGTCCTCGCCGCCCAAAACGACTGGCAGCTCCGCTTCCTCCAGCAACCCGACGACTTCTTCGACAACACGCTCTGGAACGGGATTCTCGACTCACGCGCTGCCATCAGAGACCTCATCAATGCCGACGACGTCGACGAGGTCTCCCTCGTCGACAACGCCGCCATCGTCCTCCAGCAGATCGGTCGCCGCTTCGCCCACGNCAACTTTCGCAAAAATGACACTGTCATAATGTTCCACTGCGCCTANGAGGCCGTTAAGAAATCCATCGAAGCCTACGTCACCCCCGTCGGTGGCTCCGTCGTCGAGGTGCGGCTACCGTTTCCTGTTCACTCTGACGATGAAATCGTCGCCGAGTTCAAAAAAGGGCTCGAGCGAGGCAAAATTAACGGCGGAAGAGTTAGGTTAGCGATAATNGATCACATAACGTCGATGCCTTCCGTCGTTCTCCCCGTTCGCGAATTGATTAGGGTTTGCAGAGAGCAAAGGGTGGACCAGGTATTCGTCGACGGCGCTCACGCCATCGGAAGCTTGCGCATTGATGTTAAGGAAATTGGGGCNGATTTTTACGTGAGCAATTTGTACAAGTGGTTCTTTTCTCCACCTTCGGTTGCGTTTTTTCACAGTAGGAAATCGAAATCGAGTGACGCGCACCACCCCGTGGTCTCGCGGGAATACGGGAAGGGTTTACCGGCTGAGAGCGCATGGGTTGGGATGCGAGACTATAGCCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	84496	85859	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012763.1	PF00266.14	Aminotran_5	128	319	1.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.811
SRR1783600	control	4.170
SRR1783602	moderate drought stress	10.520
SRR1811619	moderate drought stress	10.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.189
DRR006520	Root Summer glycyrrhizin high producing strain	20.421
DRR006521	Root Winter glycyrrhizin high producing strain	13.591
DRR006522	Root Winter glycyrrhizin high producing strain	12.688
DRR006523	Root Summer glycyrrhizin low producing strain	9.417
DRR006524	Root Summer glycyrrhizin low producing strain	8.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.907
SRR2868004	Drought Stress (root)	13.408
SRR2967015	Control (root)	12.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.736
SRR9715740	Leaf	12.180
SRR9715741	Leaf	3.192
SRR9715739	Root	13.981
SRR9715742	Root	5.901
SRR9715743	Root	6.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.343
SRR8749028	MeJA induced 9h	5.403
SRR8749029	MeJA induced 9h	3.773
SRR8749030	Uninduced	0.636
SRR8749031	Uninduced	0.146
SRR8749032	Uninduced	0.564

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.889
SRR8400027	Control - Root	6.514