Gene detail

Gene detail information of Glyur000315s00012762

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G01800.1	Albino or Glassy Yellow 1
NR	XP_006574521.1	PREDICTED: protein translocase subunit SecA, chloroplastic-like isoform X1 [Glycine max]
COG	NP_682641.1	preprotein translocase subunit SecA [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|Q41062\|SECA_PEA	Protein translocase subunit SecA, chloroplastic (Precursor)
trEMBL	tr\|I1LAT5\|I1LAT5_SOYBN	Protein translocase subunit SecA {ECO:0000256\|RuleBase:RU003874}

Sequence

Transcript Sequence

>Glyur000315s00012762.1
GCTTATACTTTGTCCAGCTAAGCACGAGGTATGTCTTTCTCGGCTCAAGTTACGCACCCGTGTACTTCTTAATTCTTATCTTATCTCTCGTCCTTGCCGCTACGCCAATATCCATTCCCAACTCAAACGCAGAGAACTCACTGTCTCCGTTGCCTGTGTCACCACTAAAGTCACTAACCAACCAGTAACCAACCCAACCGAGGGCAAAGGCAGGGAATGAAAACCAAACGTGGCTTTCAAAATCAATTCAAAATTATCAGTATAATCAATTTCTTCAAATTTCCCTCTCAATTCTAAAAATAAAATAAAAAATCAAAGCATGGCAGCATCGTCGTCACTTTGTTCCTCCTTTACCTCCAGAANTTGGAACACGCAGGGACGTCATCCCCACAAAACCCTAACCCTAGCGGGTCCCTCTTTTCTCCGCGGAGAATCTCAGCTCCATTCAGCGTCGGTTTCCAAAACACGGCGAAGCAGGAGGCGCCGGTATGGTGCGGTAGCCTCGCTCGGAGGTTTGTTAGGCGGCATCTTCAAAGGCAACGACACCGGAGAAGCCACGAGGCAGCAATATGCTGCAACCGTTAACATCATCAATGGATTGGAACCGGAGATTTCCGCATTATCGGATTCGGAACTGAGGGACAAGACTTTTGCGCTGCGAGAACGCGCGCAACAGGGCCAGACCTTGGATTCTCTCTTGCCTGAAGCGTTTGCTGTTGTACGAGAAGNTTCGAAGAGAGTTCTAGGCCTTCGTCCATTCGACGTTCAGCTGATAGGGGGCATGGTTCTTCATAAGGGAGAAATAGCTGAAATGAGGACCGGAGAAGGGAAGACCCTGGTTGCCATTTTGCCTGCTTATTTGAATGCATTAAGTGGGAAGGGAGTTCATGTTGTTACTGTCAATGATTATNTGGCTCGGCGAGATTGTGAATGGGTTGGTCAAGTTCCACGCTTTCTTGGAATGAAGGTTGGCCTCATCCAGCAGAATATGACAAGTGAGCAAAGAAAGGAAAATTACTTATGTGACATAACATATGTAACTAATAGCGAGCTTGGTTTTGATTACTTAAGAGACAATCTTGCCACGGAAAGTAATTCTTCCTTTACATATTTCTTGCATTTAATATATGCTTTGCAAATAGTTAATTTCTATCCTTTTGATATCGCACTGAACTCCAAACTATGGAATGTACAGAGTGTTGAGGAGCTTGTCATTAGGGGTTTCAATTATTGTATCATTGATGAGGTCGATTCAATTCTTATCGATGAAGCTAGAACTCCACTAATTATATCAGGACCTGCAGAGAAACCCAGTGATCGATATTATAAGGCTGCAAAGATAGCAGAAGCATTTGAACAAGACATACACTACACTAGGTTATGGACCTTGGACGTTTTCCTGGTGGACGAAAAACAAAAAACGGTTCTACTTTCTGAACAGGGTTATGAAGACGCTGAAGAAATTTTAGCTGTCAAAGATTTATATGATCCACGAGAACAGTGGGCTTCATATATCCTAAATGCAATTAAAGCGAAAGAACTATTTCTTCGAGATGTAAACTACATAATTCGCGGAAAAGAGATCCTAATTGTCGATGAGTTTACTGGTCGAGTAATGCAGGGGAGAAGGTGGAGTGATGGACTTCACCAGGCAGTTGAAGCAAAGGAAGGGTTGCCCATTCAAAATGAAACTGTGACACTGGCTTCTATTAGTTACCAGAATTTCTTTCTGCAGTTCCCAAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGCACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATCGTGCCTACAAACAAACCTATGATAAGAAAGGATGAATCTGATGTAGTTTTCAGGGCAACTACAGGGAAATGGCGTGCAGTTGTAGTAGAAATCTCTAGAATGCACAAAACTGGTCGACCAGTGCTTGTTGGCACCACCAGTGTAGAGCAGAGCGATTCTTTGTCAGAGCAATTGAAAGAAGCTGGAATTCCGCATGAGGTTCTAAATGCAAAACCAGAAAATGTTGAGAGGGAAGCAGAAATTGTAGCACAGAGTGGTCGTCTTGGGGCAGTGACAATTGCTACCAATATGGCTGGTCGTGGGACGGATATAATCCTCGGTGGTAATGCTGAATTTATGGCACGGTTGAAGCTTCGTGAGATACTGATGCCAAGAGTTGTTAAGCCAGCTGAAGGAGTTTTTGTATCAGTGAAGAAACCTCCTCCCAATAAGACATGGAAGGTGAATGAGATGTTGTTTCCATGCCAACTATCAAACGAAAATGCTGAGTTGGCTGAGAAGGCTGTGCAATTAGCTGTTAAAACATGGGGCAAGAGATCATTAACTGAGCTTGAAGCAGAGGAGCGCCTATCCTATTCCTGTGAAAAGGGTCCTGCCCAAGATGAAGTCATTGCTGAGCTGAGAAATGCATTTCTGGAAATTAGCAAGGAATATAAAGTCTTCACTGAGGAAGAGAGGAAGAAGGTTGTGGCAGCTGGTGGACTACATGTAGTGGGTACAGAGCGTCATGAATCAAGGCGAATTGATAATCAGCTGCGTGGTCGAAGTGGCAGACAAGGGGATCCAGGAAGCTCACGCTTTTTTTTAAGTCTTGAAGATAATATTTTTCGGATTTTTGGTGGAGACCGAATTCAGGGCTTAATGCAAGCTTTCAGAGTGGAAGACCTGCCTATCGAGTCCAAGATGTTGACCAAAGCATTAGATGAAGCCCAAAGAAAAGTGGAGAACTATTTCTTTGACATTCGGAAGCAATTGTTTGAATATGATGAAGTACTTAACAGCCAAAGAGATCGTGTTTATACAGAGAGAAGACGGGCCCTTCAATCTGACAATCTCCAGTCTCTTCTCATTGAATATGCTGAATTGACAATGGATGACATTATAGAGGCAAACATTGGCTCTGATGCTCCAAAAGACAGCTGGGATCTTGGAAAGCTAATTGCAAAAATTCAGCAATATTGCTACTTGTTGAATGATCTGACCCCTGATTTGCTGAGGAACAAGTGTTCAGATTACGAGGAATTGCAGAACTATCTCCGTCTTCGTGGTAAAGAAGCCTATATGCAAAAAAGGGATATTGTGGAGCAACAAGCACCAGGTTTGATGAAAGAAGCTGAGCGGTTCCTGATCTTGAGCAATATCGATCGCCTGTGGAAAGAACATCTACAAGCACTAAAATTTGTTCAGCAAGCTGTGGGTTTACGGGGATATGCACAGCGGGATCCACTCATTGAATACAAGTTGGAGGGCTACAACCTTTTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATATATTCTATATATCAGTTTCAACCTGTGCTGGTAAAGCAAGATCAGGATAAAACGGAGAATNCGAAGTCAGGAAAACGTAACGCACGCACTCAGGCCAATACCAACCCAGATCCAGTTGGCACTGTTGAGCCTTCTGCAAGTGCTTAGTGCGGCCATGATGCTAATCTACAACCGGAATTCCAAATTATTGAACGAGAAGGAACNGCGCGGAAGGCTTTACTTGATCCTCTATTCATGTAATAATCTAGTGTAAAATAGAATAATGATGTTCAAACTACAAAAAGAAATGTAACAGGTAGCTAGCTATAAAGAGCTACAATATTTATACCCCCCGCCCCCACAAAAAAAATTACATCNGAATACGGAGCCAAGAATAGGTTATTAATCCTAAAGTTAGTGATTAAATTTGATTTGTGACAGCATTTCCCTTTTTAGTCAGGGTCTTGAAAATCACTTTCAAGCTGAATTTGGTCCATCAGGTCGAAGTCTACATTTCATCGGCTTGAATAATATCTTCAACAGTTTTATTAATGGCGTTTCCTTTAACCTGCATTGAAAGATAATGAATAACTTATGACCTAAAATCCCAAAAAAAAGGAATAAAACCAAAAGATTTTGGTGACATCCAGAGTCATGTTCAAATAACATGGACTTCTTGCATGTTTCTAACAATGCCACAACTTTTCTTACCATTATTACATTATAAACCGGTTAAATGGCGTTAAATATTATCGTATTACAATGGGGAAGTGTAACGTAGAAATGTAGGATCGAACAGCAAGGGAGTTGAATGTAATATTAAAATTAGGAGATATATCCATATACCTCGGTCATCCCTCGAGGGAAGCTATNGTAGTTTATCATGCCAAAAAATTACATGTTTGAATTAACTTATTTTGAGAAAATAATCACTTTTTTTTTGTAATTTCGCGAGAGCGCTTTTATTGGAAAAAAAAAACTGAACCAGACATAATATAAATCTTGTGCGAGGCAGGACCTCACCTTAATTCCAATAGCAAGGGCAGTTTTCAATTTAACAAGTTCACCTAATCTCAAAGAACCTTCTTTATCATCCTTAACAAAGATCAGGGGTACGCTCCTTGATGAAGCCAAACTTTCCAGATGCTTTGTCAGC

Protein Sequence

>Glyur000315s00012762.1
MAASSSLCSSFTSRXWNTQGRHPHKTLTLAGPSFLRGESQLHSASVSKTRRSRRRRYGAVASLGGLLGGIFKGNDTGEATRQQYAATVNIINGLEPEISALSDSELRDKTFALRERAQQGQTLDSLLPEAFAVVREXSKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYXARRDCEWVGQVPRFLGMKVGLIQQNMTSEQRKENYLCDITYVTNSELGFDYLRDNLATESNSSFTYFLHLIYALQIVNFYPFDIALNSKLWNVQSVEELVIRGFNYCIIDEVDSILIDEARTPLIISGPAEKPSDRYYKAAKIAEAFEQDIHYTRLWTLDVFLVDEKQKTVLLSEQGYEDAEEILAVKDLYDPREQWASYILNAIKAKELFLRDVNYIIRGKEILIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYKLKVTIVPTNKPMIRKDESDVVFRATTGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLSEQLKEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRVVKPAEGVFVSVKKPPPNKTWKVNEMLFPCQLSNENAELAEKAVQLAVKTWGKRSLTELEAEERLSYSCEKGPAQDEVIAELRNAFLEISKEYKVFTEEERKKVVAAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMQAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEYDEVLNSQRDRVYTERRRALQSDNLQSLLIEYAELTMDDIIEANIGSDAPKDSWDLGKLIAKIQQYCYLLNDLTPDLLRNKCSDYEELQNYLRLRGKEAYMQKRDIVEQQAPGLMKEAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVLVKQDQDKTENXKSGKRNARTQANTNPDPVGTVEPSASA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	70693	81203	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006605 protein targeting

GO:0006886 intracellular protein transport

GO:0017038 protein import

cellular_component
GO:0016020 membrane

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012762.1	PF07517.9	SecA_DEAD	78	490	4.30E-110
Glyur000315s00012762.1	PF01043.15	SecA_PP_bind	329	447	3.00E-33
Glyur000315s00012762.1	PF07516.8	SecA_SW	797	1013	2.20E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.906
SRR1783600	control	7.807
SRR1783602	moderate drought stress	14.399
SRR1811619	moderate drought stress	14.171

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.695
DRR006520	Root Summer glycyrrhizin high producing strain	8.709
DRR006521	Root Winter glycyrrhizin high producing strain	6.705
DRR006522	Root Winter glycyrrhizin high producing strain	6.249
DRR006523	Root Summer glycyrrhizin low producing strain	10.065
DRR006524	Root Summer glycyrrhizin low producing strain	10.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.719

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.335
SRR2868004	Drought Stress (root)	13.309
SRR2967015	Control (root)	15.573

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.812
SRR9715740	Leaf	39.947
SRR9715741	Leaf	33.781
SRR9715739	Root	0.967
SRR9715742	Root	7.175
SRR9715743	Root	6.497

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.990
SRR8749028	MeJA induced 9h	16.922
SRR8749029	MeJA induced 9h	10.806
SRR8749030	Uninduced	14.190
SRR8749031	Uninduced	14.573
SRR8749032	Uninduced	16.211

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.201
SRR8400027	Control - Root	14.941