Gene detail information of Glyur000315s00012760.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62110.1 | 0 | Pectin lyase-like superfamily protein |
| NR | XP_003519731.2 | 0 | PREDICTED: probable polygalacturonase-like isoform X1 [Glycine max] |
| COG | YP_001179193.1 | 5.00E-65 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 2.00E-158 | Probable polygalacturonase |
| trEMBL | tr|I1JBA6|I1JBA6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G01050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00315 | 61704 | 65643 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000315s00012760.1 | PF00295.12 | Glyco_hydro_28 | 178 | 457 | 7.70E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.669 |
| SRR1783600 | control | 16.876 |
| SRR1783602 | moderate drought stress | 12.825 |
| SRR1811619 | moderate drought stress | 12.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.864 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.213 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.498 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.682 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.671 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.966 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.822 |
| SRR2868004 | Drought Stress (root) | 16.009 |
| SRR2967015 | Control (root) | 16.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.151 |
| SRR9715740 | Leaf | 7.918 |
| SRR9715741 | Leaf | 9.300 |
| SRR9715739 | Root | 6.175 |
| SRR9715742 | Root | 8.490 |
| SRR9715743 | Root | 8.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.605 |
| SRR8749028 | MeJA induced 9h | 4.831 |
| SRR8749029 | MeJA induced 9h | 2.880 |
| SRR8749030 | Uninduced | 1.925 |
| SRR8749031 | Uninduced | 0.794 |
| SRR8749032 | Uninduced | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.470 |
| SRR8400027 | Control - Root | 24.824 |