Gene detail

Gene detail information of Glyur000315s00012757

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01730.1	8.00E-137	DHHC-type zinc finger family protein
NR	XP_004495856.1	0	PREDICTED: probable S-acyltransferase At4g01730-like [Cicer arietinum]
Swissprot	tr\|Q9M115\|ZDH16_ARATH	0	Protein S-acyltransferase 18
trEMBL	tr\|I1LAT9\|I1LAT9_SOYBN	0	S-acyltransferase {ECO:0000256\|RuleBase:RU079119}

Sequence

Transcript Sequence

>Glyur000315s00012757.1
ATGAGACGCCATGGCTGGCAACGNCCTCTCCACCCTTTACAGTTTGTGGGCATGGCAGTTTACAGTTTTCTGGTTGTGTGTTTCTACACTTTCCTGGGACTTTTCCTCGGAAACCGAACTGCCGAGATAACACTCACCTTCATGTTTTCCTTCGTGGCAATCTCGGTTATGTTTCTGTTTGTGAGGTGTACGGCGATTGACCCCACAGACAGAACCAGCTTTAGGAAGAGGAAAAAAGCCAAAAAGGATGCGATTCCGAAGCTGAACTACGGGTTCATTATGGGGCAGATTGTGATGAGGTTTTTCAGGAGGGTGGAAAAGAAGATGCTTAGGACTTTCATTAAGAGGAAGTACCTGGATCCGTTGAAGACTAGTGCCCAAGTGGAGCCTCTTCTCCCATTCCCACTTGTCATGAAAGATGATGATGATGCCATTGCCCCCAATCTCAATGAGGATGACATCTCATTCTGCACACTCTGTGATTTTGAGGTGAAAAAGCACAGTAAGCACTGCAGGACCTGTAATCGCTGCGTTGAAGGGTTTGATCACCATTGCAGGTGGTTGAATAACTGTGTAGGGAAAAAGAACTACACAACGTTCTTTCTTCTCATGATTTTCGTCATGTTAATGCTTGTCATTGAAGGAGGGGCTGCAATTGCTATATTTATCAGGTGCTTTGTGGACAAGAGAGGAATAGAAAAGGAGCTCCAGAGGAAGCTTTTTGTTGAGTTTCCAAGAGGAGTTCTTGCCACCATATGTGTGTTGCTTCTCTTATTGACAGCTTATAGTTCAGCTGCACTGGGGCAGCTTTTCTTCTTTCACGTGGTCCTGATAAGAAAGGGGATGAGGACCTATGACTATATCCTGGCGATGAGAGAACAGAATCAAGCCATGGAATTGGAATCATTTGATGATTCTGACCTCTCATCAGATGACAGCATTGATTTTGACTCACCTGAGAAGCCAACACTAATGTCAAGGTTTCTATGCAAAGGACAGAGGGTAAACCAGATTGCATCACTTTATGCCGTGATTCTGACTCAAACCTTACAGGGAAAGCTTGTTTTTGAGTTTCAGAGTTCACCTGGGTTGTCTATCAGAATTGAAGGAGAAACTGAACCTTCCCCCTTGATCAAGACAAAAAAATTTCACGTAANCATTAACCCTTGGAAACTCATAAAGTTGACCAGAGAAAAAGCCCTACTGGCAGCTGAGAAAGCAAGGGAAAGGCTCCTGAAAGAAAGGCCTACGGGGGAGCAGGGTTCATTAAGACCTCTTCCACTAGAAACAAAACGTGGGCCATTGATGAATGCGGATAAAGATATTGGCAATGAGGGATCTGGAGCAACACCTTTTACAGCAAAAGGGAAGCTTTCTGGGTCACCAGTAAGGTTTTCAAGCCCAAGAAGGAGATTTTCCGCTGGCTCAACAACGGTGTTCTCTAGCAGCATGNTGGCATCTCCACAACACAAATATAGAGGCAGTTTTGACTTGAAGTTAACGGGCGTGTCCAGGGAGCTTGAAACACATATTTCAAGGCAGGTTCTATGTTCAGTTATCAGCAAAGATGGAAGTGAACCATCCCCAAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	58594	61008	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012757.1	PF01529.15	zf-DHHC	145	288	1.90E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.964
SRR1783600	control	0.930
SRR1783602	moderate drought stress	0.509
SRR1811619	moderate drought stress	0.535

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.929
DRR006520	Root Summer glycyrrhizin high producing strain	1.947
DRR006521	Root Winter glycyrrhizin high producing strain	0.420
DRR006522	Root Winter glycyrrhizin high producing strain	0.409
DRR006523	Root Summer glycyrrhizin low producing strain	0.619
DRR006524	Root Summer glycyrrhizin low producing strain	0.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.357
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.356

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.343
SRR2868004	Drought Stress (root)	2.506
SRR2967015	Control (root)	3.183

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.962
SRR9715740	Leaf	0.238
SRR9715741	Leaf	0.306
SRR9715739	Root	1.039
SRR9715742	Root	0.909
SRR9715743	Root	0.980

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.175
SRR8749028	MeJA induced 9h	8.280
SRR8749029	MeJA induced 9h	8.304
SRR8749030	Uninduced	1.391
SRR8749031	Uninduced	0.474
SRR8749032	Uninduced	1.461

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.245
SRR8400027	Control - Root	4.664