Gene detail

Gene detail information of Glyur000315s00012756

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62300.1	1.00E-49	WRKY family transcription factor
NR	XP_006604764.1	3.88E-133	PREDICTED: probable WRKY transcription factor 47-like isoform X1 [Glycine max]
Swissprot	tr\|Q9XEC3\|WRK42_ARATH	1.00E-70	Probable WRKY transcription factor 42
trEMBL	tr\|I1NBI8\|I1NBI8_SOYBN	1.00E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40950.2}

Sequence

Transcript Sequence

>Glyur000315s00012756.1
ATGGAAAACCACCAGCACCACCAAATGCAACAACACCGCCGTGAATTGACCTTCTTAAGCTCCGACAACTTCCTCCGGGGCCAGAATCCGGACCAAATGACCGGAGAGCATAGCAACCCTTCCATCAAAGAAGTGGATTTCTTATCATCATCACCTTCACCGCCCAATTATCACACTGATAACAATTACAATAACCAGGAAGACGACCAGCACTCTCCTCGTAAGATCGCTAAAGAATCAACTGATGGCCTCGTTAACGTAAGTTTTCAAATTAAAACACAAAATATAGTACTTAATTTGCTGCCAATGATTAATACCGCTCTGAATTTAACATGTGCAAGTGCAGCTGGAATGTCAAGAGCAGCAAATGATGAAAATCCTAAAGCTGTGCTGAGGCTGAGTACACTTCGAAGGGAATCACTGAGACTACAAGAAGAGAACTCCAGGTTGAGAACTATGCTGGACCAGATTACCAAAAACTATAGCCAACTACAATTGTTCATCGCTTTTCAGAAACAAAGGCTTTATCAGCAGGAGGTGGAGGTGGGGACAAATGGGATGAATTCGGGTCAACATAATTTTCGGGACCCAAGGCTATGCACCAAATTAGACGTCAATATTATAAAACCGGTTTCAGATGGTGATCATCAAGAAGTATTGGTTTCTCCCTCAAACCAACTCGACCATCATCAGCACCATCCTTTGACCAAACTCAATAATGATGGTCCTGGAAAGCAGGCTTGTCCTGTTCTTACACATGAAGATGTTCTTGACCACCAGTCATCGCCATCCAAGTTAGAAGAATCCATAGCTGGTGGCCATGGCGAGCTCCCTTTCAGAAAAACCCGGGTTTCCGTGCGTGCCAGATCTGAGGCTCCCATGATTAGCGATGGGTGTCAGTGGAGGAAATATGGGCAAAAAATGGCCAAGGGTAACCCCTGTCCTCGTGCCTACTATCGCTGCACTATGGGTGTAGGGTGCCCAGTTCGTAAGCAGGTGCAAAGATGCACGGAAGACAGGGCGGTGTTGATAACAACATACGAAGGGAACCATAATCACCGTCTCCCACCACAAGCCACTGCCATGGCCAATTCAACATCAGCAGCAGCGGCAATGCTCCTATCTGGTTCGGCAAGGAGCAACGAAGNGGCGCTAACGAACTCTGCTGGATACTTCTCCTCTGTCTCATTGTCAGCCTCTGCGCCATTCCCCACTATCACCCTCGACATGGCCCACTACCCCATGCAGCTGCATCGAGATCCCTTCCATNTTGCACCAGCTTCTAATTTTCCTCAGTTGGTCTTCCCCCAGAATAAGCTGCTGCAACCTTCGTCGTCTATGGTGGAGACGGTGACTGCAGCTATTACTTCTGATCCCAACCTCACTGCAGCGCTCGCAGCTGCCATCTCATCATTTGTTGGAGTACAACCCAGATCACCAACTGATGATCANATTGGAAACGGGACATCTGTGTTGCCCGGAGTCCACGCTTTCATGCACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	53315	56624	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012756.1	PF03106.10	WRKY	296	354	4.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.795
SRR1783600	control	12.199
SRR1783602	moderate drought stress	20.688
SRR1811619	moderate drought stress	20.767

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.796

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.594
SRR2868004	Drought Stress (root)	1.227
SRR2967015	Control (root)	2.417

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.504
SRR9715740	Leaf	0.490
SRR9715741	Leaf	1.061
SRR9715739	Root	16.880
SRR9715742	Root	8.604
SRR9715743	Root	12.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.400
SRR8749028	MeJA induced 9h	1.494
SRR8749029	MeJA induced 9h	5.556
SRR8749030	Uninduced	0.491
SRR8749031	Uninduced	2.658
SRR8749032	Uninduced	1.405

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.014
SRR8400027	Control - Root	15.506