Gene detail

Gene detail information of Glyur000315s00012753.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01700.1	3.00E-115	Chitinase family protein
NR	AFK40521.1	2.86E-169	unknown [Lotus japonicus]
COG	YP_003125181.1	7.00E-53	chitinase [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q5NB11\|CHI10_ORYSJ	9.00E-130	Chitinase 10 (Precursor)
trEMBL	tr\|I3SJS9\|I3SJS9_LOTJA	1.00E-169	Uncharacterized protein {ECO:0000313\|EMBL:AFK40521.1}

Sequence

Transcript Sequence

>Glyur000315s00012753.1
GCCATTTTAATTGACCCTGTTTTTTTAGCAAATGGCATTCTCATTCTCCTCTGGCTTCTTATTTTGCTACACAGTGCTGCTTTACTCGGCATGCTTGGGAGCTGAAGCACGTAGCTTAAACCCTGTCATTAGCAAAAAGCTTTATGATTCCATTTTCCTACACAAAGATGACAGTGCATGCCCTGCCAAAAACTTCTACACCTACGAGTCCTTCGTGCAGGCATCCGAATACTTCCCTGAATTTGGCACCACAGGTAGTTTAACCACGCGCCAGCGTGAGATTGCTGCTTTTCTTGCTCAGATTTCCCACGAAACCACGGGTGGGTGGGCTACTGCACCTGATGGACCTTATGCTTGGGGATTGTGCTTCAAGGAAGAAGTTAATCCCCAAAGTGACTACTGTGATTCCACCAACAAAGAATGGCCTTGTTATCCAGGAAAAAGTTACAAAGGCAGAGGACCAATTCAACTTTCTTGGAACTATAACTATGGGCAAGCAGGGAAGGCCTTGGGATTTGATGGATTGAGAAACCCAGAAATTGTGTCAAACAATTCATTGATTGCCTTTAGAACAGCTCTGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCATGCCACAATGTGATGATAGGAAGATATGTGCCAACAGAAGCTGACATTGCAGCTAACCGAACTGCAGGGTATGGCCTGGTGACGAACATAATCAATGGTGGGCTCGAATGTGGAATTCCTGAAAATGGACGGGTGAATGATCGGATTGGATACTTTAAGNGATACGCGAGTTTGTTTAATGTGGATACGGGACCTAACTTGGATTGTGCAAATCAGAAATCCTTCTAAAACTCTTCAAATGTTTTAATTTTCAGCCTGGGTTTTATTTTCTTTTCTCTAGCCAAGGTTCAACAATGCACTGAAAGCAGATATCTAGCTACTTTGTGGCATTTTCCTTTTCTAGTTTTATTATCAGAAGTTGATAAATACAAGGTTTTACGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	42653	43986	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH19

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006032 chitin catabolic process

GO:0016998 cell wall macromolecule catabolic process

molecular_function
GO:0004568 chitinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012753.1	PF00182.14	Glyco_hydro_19	32	264	1.70E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.729
SRR1783600	control	0.731
SRR1783602	moderate drought stress	0.418
SRR1811619	moderate drought stress	0.414

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.132
DRR006520	Root Summer glycyrrhizin high producing strain	40.315
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	11.420
DRR006524	Root Summer glycyrrhizin low producing strain	11.236
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.827
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.673

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.132
SRR2868004	Drought Stress (root)	73.695
SRR2967015	Control (root)	52.728

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	262.862
SRR9715740	Leaf	47.082
SRR9715741	Leaf	327.026
SRR9715739	Root	22.755
SRR9715742	Root	45.214
SRR9715743	Root	42.027

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	233.563
SRR8749028	MeJA induced 9h	200.201
SRR8749029	MeJA induced 9h	283.714
SRR8749030	Uninduced	91.320
SRR8749031	Uninduced	92.250
SRR8749032	Uninduced	68.182

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.584
SRR8400027	Control - Root	16.073