Gene detail

Gene detail information of Glyur000315s00012752

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62100.1	1.00E-19	indole-3-acetic acid inducible 30
NR	XP_007145089.1	2.89E-63	hypothetical protein PHAVU_007G208800g [Phaseolus vulgaris]
Swissprot	tr\|Q9M1R4\|IAA30_ARATH	3.00E-23	Auxin-responsive protein IAA30
trEMBL	tr\|V7BJ85\|V7BJ85_PHAVU	1.00E-63	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00315	40441	41475	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

"

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000315s00012752.1	PF02309.11	AUX_IAA	52	156	2.70E-16

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.419
SRR1783600	control	0.338
SRR1783602	moderate drought stress	0.486
SRR1811619	moderate drought stress	0.424

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.551
DRR006520	Root Summer glycyrrhizin high producing strain	1.692
DRR006521	Root Winter glycyrrhizin high producing strain	0.136
DRR006522	Root Winter glycyrrhizin high producing strain	0.172
DRR006523	Root Summer glycyrrhizin low producing strain	0.219
DRR006524	Root Summer glycyrrhizin low producing strain	0.351
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.735

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.774
SRR2868004	Drought Stress (root)	3.080
SRR2967015	Control (root)	2.170

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.112
SRR9715740	Leaf	2.979
SRR9715741	Leaf	1.453
SRR9715739	Root	0.487
SRR9715742	Root	0.333
SRR9715743	Root	0.646

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.662
SRR8749028	MeJA induced 9h	84.019
SRR8749029	MeJA induced 9h	255.244
SRR8749030	Uninduced	42.536
SRR8749031	Uninduced	37.873
SRR8749032	Uninduced	34.160

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.760
SRR8400027	Control - Root	1.796