Gene detail information of Glyur000315s00012747 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46970.1 | 1.00E-24 | phytochrome interacting factor 3-like 1 |
| NR | KHN14238.1 | 4.25E-93 | Transcription factor PIL1 [Glycine soja] |
| Swissprot | tr|Q8L5W8|PIL1_ARATH | 8.00E-31 | Transcription factor PIL1 |
| trEMBL | tr|K7LJB0|K7LJB0_SOYBN | 3.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G27910.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00315 | 15802 | 19237 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000315s00012747.1 | PF00010.21 | HLH | 326 | 370 | 2.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.646 |
| SRR1783600 | control | 2.588 |
| SRR1783602 | moderate drought stress | 0.875 |
| SRR1811619 | moderate drought stress | 0.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.052 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.026 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.583 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.356 |
| SRR2868004 | Drought Stress (root) | 1.143 |
| SRR2967015 | Control (root) | 1.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.976 |
| SRR9715740 | Leaf | 21.421 |
| SRR9715741 | Leaf | 11.037 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.057 |
| SRR9715743 | Root | 0.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.016 |
| SRR8749029 | MeJA induced 9h | 0.073 |
| SRR8749030 | Uninduced | 0.121 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.638 |
| SRR8400027 | Control - Root | 0.977 |