Gene detail information of Glyur000314s00018024 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03400.1 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_006592415.1 | 0 | PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like isoform X2 [Glycine max] |
| COG | YP_004741033.1 | 1.00E-06 | CF4-like protein [Capnocytophaga canimorsus Cc5] |
| Swissprot | tr|Q6I581|GH35_ORYSJ | 0 | Probable indole-3-acetic acid-amido synthetase GH3.5 |
| trEMBL | tr|I1LRZ0|I1LRZ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G11890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00314 | 122107 | 126596 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000314s00018024.1 | PF03321.8 | GH3 | 35 | 593 | 1.60E-155 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.037 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.260 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.268 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.110 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.346 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.402 |
| SRR2868004 | Drought Stress (root) | 0.503 |
| SRR2967015 | Control (root) | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.860 |
| SRR9715740 | Leaf | 132.627 |
| SRR9715741 | Leaf | 112.974 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.932 |
| SRR9715743 | Root | 1.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.151 |
| SRR8749029 | MeJA induced 9h | 0.114 |
| SRR8749030 | Uninduced | 0.190 |
| SRR8749031 | Uninduced | 0.286 |
| SRR8749032 | Uninduced | 0.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.343 |
| SRR8400027 | Control - Root | 0.558 |