Gene detail

Gene detail information of Glyur000314s00018019

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G03415.2	Protein phosphatase 2C family protein
NR	XP_004506557.1	PREDICTED: probable protein phosphatase 2C 52-like [Cicer arietinum]
Swissprot	tr\|Q8GY60\|P2C52_ARATH	Probable protein phosphatase 2C 52
trEMBL	tr\|V7AKM5\|V7AKM5_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW04646.1}

Sequence

Transcript Sequence

>Glyur000314s00018019.1
ATCCTACTATGTTCTTTTTGACCTCCTNCCTACCCTTTACTCCTTTTTCTTTCTGTTCTGTCTATTCTGCTTTTGCAATGAATGCGGCACTACTACCAGCCCCATCCATCCACGCTAACTTTCCTTATTAATACTCAAACCCCCCTCTCTTTTTCACTCTCTTTCTCTCCTTCCTCTAACTCTGACTCTGATCTCACTCTGCTCTTCTCTGTTCCCCCAACCTCAATTTCCTGCATTCTAAGAAAGCTGGTTTCATTATCCATTCAAACAACTTCTGTTCAGATTTTGCTTTTGACTATGGGAGGAAAGAGCCAATTTTTCTACAATGAGTTGTAATTGGTGGCTTATATTTTGACCTGAGAGAATATTTGGACTCAGGATTGTTTGCTCAGTTGACCAGACTTGCAATCTCAGCAATTGATGTGAGCTCTATAGTGAAAAGGGAATCAACTTGACGTTACCCCCATCTGATGTGTGTGTTCTGGGGCTGAGCAAATGGGTTGTTGTGTCTCAACAAGCAGTCGAAGTACTTGTAGCAGCAGGAGCAATGGAGAGATGGTATCTACTCCATCTTGCTTAGAAATTGGATTCTGTGGGCAAAAGAGAGCAAGGAGAACGTTCTCCGATCATGTCATTTCTCTTCACCATTTATCGTCCTTACCCAGCAGAATTTTCACCAATGGAAAGAGCCGGGCTTCTTGCATATTTACGCAGCAGGGCCGCAAGGGTATTAATCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCTGAAGATATGATCTTTTGTGGTGTCTTTGATGGCCATGGTCCACACGGTCATCTTGTTGCACGCAAAGTGAGGGATACATTGCCGGTAAAACTGCTTTCGTTTTTGCATTCCTGTGAATCGAAGCGAGATGGATCAGGTAAAGGTTGTTTCAAACGGAACACAAAACCTGACAGTGAAGACTCCGAGAAGGAATGTTCTGCCGAGGATAAACTGAACTCCACATGGAGAGAAGCTTTCATGAAGGCATACAAGGCCATGGACAAAGAGCTCAGGTCTCATCCAAATCTGGACTGCTTCTGTAGCGGGAGCACAGCTGTAACTATAGTGAAGCAGGGTTCAAATCTGTTTATGGGCTATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGATAGCAACGACTCCATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCGGAAAGGATTAAGCGGTGCAAGGGTAGGGTATTTGCTTTGCAAGATGAGCCGGAAGTGCCTAGGGTGTGGTTGCCTTTTGATGATGCACCGGGATTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGTTGCTTACGGACAGAGATCAATTCATTGTTCTTGCCTCTGATGGGGTCTGGGACGTTTTAAGCAATGAGGAGGTGGTTGAGATAGTATCTTCAGCACCGACACGGTCATCAGCAGCAAGGATTCTGGTAGATTCTGCGGCTCGGGAGTGGAAGCTCAAGTACCCGACATCNAAGATGGATGACTGTGCTGTAGTCTGCTTATTTTTGGATGGGAAAATGGACTCGGAATCCGACTACGAGGAACAAGGCTTCTCTTCCGCAACCATCCAAAGCAACCATTCGGGCAATCCAATTGAGTCAGATGATGGACAAAAGTCTGAGCCATCTTTGCAAAGGAACTTCACTGTGAGATCATCAGAAGAAAACGAGACCAATGGAGCACTATCTGTTGATGTTGAAGATGGAACATCAGCAGCAGCTGATGATCAAAACTGGTTGGGTTTGGAAGGGGTTACCCGTGTAAACTCACTCGTCCAACTTCCTAGATTTTCCGAGGAAAGGTCAAACTCTTGAATTTCTTGGTTCTTGGGGACTGTTTATTGTAATACCTGGCACAACACTGAATTCAAGAAAGAATTTTTTTTGTGGAAATGGTGTCATTTTGATGCTCATTGGGTTGGCTAATTTAGTGCCTTTGAAAACCATTTCCACAAATTCCAAAAGCACAAAAATTGAGTTTTGACCAAAGCATCAAGACACTTAAAACTCAGATTTTGTGAAATTTGCGCAAATGGTTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00314	110293	115304	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000314s00018019.1	PF00481.16	PP2C	96	348	6.60E-37
Glyur000314s00018019.2	PF00481.16	PP2C	96	348	6.60E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.400
SRR1783600	control	19.329
SRR1783602	moderate drought stress	14.510
SRR1811619	moderate drought stress	14.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.104
DRR006520	Root Summer glycyrrhizin high producing strain	25.750
DRR006521	Root Winter glycyrrhizin high producing strain	18.402
DRR006522	Root Winter glycyrrhizin high producing strain	17.572
DRR006523	Root Summer glycyrrhizin low producing strain	24.697
DRR006524	Root Summer glycyrrhizin low producing strain	25.111
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.025

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.134
SRR2868004	Drought Stress (root)	25.526
SRR2967015	Control (root)	42.718

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.901
SRR9715740	Leaf	5.628
SRR9715741	Leaf	6.402
SRR9715739	Root	12.356
SRR9715742	Root	19.152
SRR9715743	Root	16.769

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	124.542
SRR8749028	MeJA induced 9h	45.274
SRR8749029	MeJA induced 9h	52.945
SRR8749030	Uninduced	17.829
SRR8749031	Uninduced	12.494
SRR8749032	Uninduced	16.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.712
SRR8400027	Control - Root	37.523