Gene detail

Gene detail information of Glyur000314s00018015

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03620.1	9.00E-102	ELMO/CED-12 family protein
NR	XP_006582327.1	0	PREDICTED: ELMO domain-containing protein A-like isoform X1 [Glycine max]
trEMBL	tr\|K7KY55\|K7KY55_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G45080.2}

Sequence

Transcript Sequence

>Glyur000314s00018015.1
ATGGCTTCCGAAGCCACAGAAACAAACACACAAACCAAACCATCACAACACTCCTCCTCCTCCTCAATGCAAAAACTCAATCTGAAACAAGATGCCATTTTTCCACTTCCCATGTTCCCTCTTCTTTCTGGCCCCACCACCACTCCCCTCTACTGTCCCAGTAGCTCCCTTTCAGACATTGATACCACCAAGTACCTCACCACTGACGACATGTCTTCTCTCTTCTCAGATACCGTTGATGAGGATGAGGTTTATTGGAGACATAGAAAGGAAGATGAAGAGTTGGAATGGTCACATAATTCCACTCACTTAATAACTCAGTTGACTCAATGTTTTTCTAATGCTATGGTTGGATCACGATCATGGATAGGAGGACTCTTTCACCGCACAAACACTAAACGAAATGATAAGTTTATTGACTATCCTTTGACTCCTCTTGAGGAGGAAAGACTTCAAAAGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAAACTTGCCCCGATCATCAAGAATCACTGAGAGCTTTGTGGCACTGTTCCTTTCCTAATGTTTCTCTGCAAGGCTTGATATCTGACCAATGGAAAGATATGGGATGGCAAGGTCCTAATCCATCAACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTGCTGTTTTTCGCGAAGAAATATCCGGTATGCATTTTTATTACTAATTTTATGGAAATTCAAATGAAGGCATCTTTTCACAGGCTGTTGTTGAAGAAAGATGGAGATCGAGCAACATGGGAATATCCATTTGCTGCTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAACAAAGCCTCGATGTGTTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAGATGAAGAAGCATTCGACATTCTGTACTGTATAGCTTTTGAGATGATGGATGCGCAATGGCTGGCNATGCATGCTTCCTACATGGATTTTAACGAGGTTCTACAAGCAACACGGATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAGAATACAAGACTTGCCTGCTTACAATCTGTTGTACCAATAGCTTTACTCTTTCTGTTCTGTCCATAAGCAACAAATTCCAAGTGGCACAATTTTGTAAGTATTGCAAACAAATTTTACAATATCTATCCTCATTGAAGTGCAGGGATTTACTCCTCTTCTGAATGAATTTGTATGAGTCACCCTTTGAAGTTCTTTNTAGCTGACACTTGGTCAATGATCTAATCACATTGAAAGGGCATTTTGAGACAGAATGTATTTTGAAATGGTCGTTGGATTTTTCTTAATTCTGAGGGGCAATTGATGATTTGATGAGAAGTGAGAACCCATCTGATCTGAAAATTGGATATAAGAAAAATAGGATTAAAATCTTGATGAGGAATTAGTATCAAGTGACAGAAGAATTAGTATCAAGTGCTACAATGTAACGGATCCTATCTTATGCCTTTTTTTACTTTAAATTTTTCACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00314	78199	84071	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000314s00018015.1	PF04727.8	ELMO_CED12	150	334	1.80E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.706
SRR1783600	control	18.150
SRR1783602	moderate drought stress	10.413
SRR1811619	moderate drought stress	10.694

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.400
DRR006520	Root Summer glycyrrhizin high producing strain	32.787
DRR006521	Root Winter glycyrrhizin high producing strain	0.398
DRR006522	Root Winter glycyrrhizin high producing strain	0.326
DRR006523	Root Summer glycyrrhizin low producing strain	13.850
DRR006524	Root Summer glycyrrhizin low producing strain	13.293
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.532
SRR2868004	Drought Stress (root)	10.141
SRR2967015	Control (root)	11.009

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.485
SRR9715740	Leaf	2.523
SRR9715741	Leaf	2.176
SRR9715739	Root	1.308
SRR9715742	Root	4.375
SRR9715743	Root	4.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.618
SRR8749028	MeJA induced 9h	0.479
SRR8749029	MeJA induced 9h	0.872
SRR8749030	Uninduced	0.209
SRR8749031	Uninduced	0.546
SRR8749032	Uninduced	0.471

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.099
SRR8400027	Control - Root	27.366