Gene detail information of Glyur000314s00018014 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 8.00E-53 | O-methyltransferase 1 |
| NR | XP_004506552.1 | 0 | PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Cicer arietinum] |
| COG | YP_003370082.1 | 2.00E-35 | O-methyltransferase family 2 [Pirellula staleyi DSM 6068] |
| Swissprot | tr|Q6WUC2|7OMT_PAPSO | 2.00E-123 | (R,S)-reticuline 7-O-methyltransferase |
| trEMBL | tr|G7JTH4|G7JTH4_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK48346.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00314 | 67704 | 77080 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000314s00018014.1 | PF08100.6 | Dimerisation | 62 | 110 | 6.00E-10 |
| Glyur000314s00018014.1 | PF00891.13 | Methyltransf_2 | 124 | 364 | 3.70E-81 |
| Glyur000314s00018014.2 | PF08100.6 | Dimerisation | 58 | 106 | 5.90E-10 |
| Glyur000314s00018014.2 | PF00891.13 | Methyltransf_2 | 120 | 360 | 3.60E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.878 |
| SRR1783600 | control | 10.979 |
| SRR1783602 | moderate drought stress | 48.499 |
| SRR1811619 | moderate drought stress | 40.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.471 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.611 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.674 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.655 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.609 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.427 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1221.258 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1215.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.416 |
| SRR2868004 | Drought Stress (root) | 36.190 |
| SRR2967015 | Control (root) | 12.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 309.187 |
| SRR9715740 | Leaf | 150.543 |
| SRR9715741 | Leaf | 113.639 |
| SRR9715739 | Root | 10.540 |
| SRR9715742 | Root | 28.418 |
| SRR9715743 | Root | 26.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.168 |
| SRR8749028 | MeJA induced 9h | 37.183 |
| SRR8749029 | MeJA induced 9h | 23.509 |
| SRR8749030 | Uninduced | 18.420 |
| SRR8749031 | Uninduced | 51.655 |
| SRR8749032 | Uninduced | 35.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.017 |
| SRR8400027 | Control - Root | 52.915 |