Gene detail

Gene detail information of Glyur000314s00018011.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20880.1	1.00E-35	Integrase-type DNA-binding superfamily protein
NR	XP_003526286.2	3.19E-153	PREDICTED: ethylene-responsive transcription factor ERF053-like [Glycine max]
Swissprot	tr\|Q9SKT1\|ERF53_ARATH	1.00E-47	Ethylene-responsive transcription factor ERF053
trEMBL	tr\|K7KY49\|K7KY49_SOYBN	2.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G45010.2}

Sequence

Transcript Sequence

>Glyur000314s00018011.1
ATGGATAGCGACAGAGTGGGGAGTGAAAGTGAAACGTGGAAATTGACGCTGAAACAGAGCAAACAAGCAAAGACGAAGCGCATGGGACCCAGAGTTTTGACATTCGATTCTGCTTTTGATTTTGATCGGATTCAGCTTTTGAAATCAGAACGCAGAATCCAAAATTCGGTCTCCCCTAACTATCTATCTGATTCTGGAAGGTGGTGGTTGTTGTTGTTGTGGTTGGTTCTCATGGCCGCGGCAAAGAAGAGTGGAAAATCCAGCAAGGAGGGTGTTGATGAGACACCCAAGGTGATTGGAGAAAATGAAAGCAAAGATTGGGAGATGGAGAAGAAGGGAAAGGGTCTTGAATCGAGCTCAGGGAGGCGGCAATGGGAGCCAGTTTTTGATGATGTTTCCATGCCACATAGGCCTCTCAAGAAGATTCGTAGCCCAGAACGCCAAAACCCAAACCAACCACCATCCTCTGTTCTGTCTCTGCAACCCCCTTCCTCTAGAATAGTCTTCCCTTTTGCTTTTGATTTTGAAGCCCCTCAGAATCCAATGCCATTCCCACACCAATCTGGAACCCCAAATTTGCCTCTTTTTCCTCCTCCACCTGTTCGGCCAACGCAACAGATGATATCTTTTGGGCCCCAGCAGAACATGGGGTATCCACCACCATCACCACCATTCCTAGCCCCAGATTCTGTTTTACCTTACCAACACCAAAACCAACAACTTCAGCAGCAGCAGTTTCTTCAGTATTGGAGGAGGAATATGTTAGGGCCAGAAGACGGGAGACCAATGTTGAGGCCCCAAACACAGCCTTATAGTGCCACAAAGCTCTACAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAGATTCGTCTCCCTCGCAATAGGACTCGCCTCTGGCTTGGCACATTTGACACCGCTGAAGATGCTGCCATGGCTTATGATNGAGAGAATGCTAAGCTCAATTTCCCCGAGCGCTTCCTCAACAAGGATAAGCCACCATCATCCACAACAGCTCCAACTTCTTCTTCTCTCGACGAAGGTTCCACATCCACATCAAACCAGAACACAAAGCAACCTGAACAACCGGTTCCAGAGGACCATAACATGCTCATGCCCCCACCGGAACCAATAGCGGAAGAGAGTGCTGAAACTGGGGAAGGCATTTCAGAGTCTCAGGAATTGGTTTGGGGAGAAATGGCTGCTTGGTTCAATGCAATTCCTGCGGGTTGGGGTCCAGGTAGCCCCATGTGGGATGATTTGGATCCCAATAATAGTAATCTTCTTTTGCAGTCACAGGTGAATCCAAATCAGCAAGAATTCCATGCTGGCGATGCTGCTGATCAGAGACAAGAAGATAATAACAACAACAACACAGGAACAGGTTCTTCCTCTTCCTCTTGTCCCATGAGGCCCTTCTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00314	56555	58565	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000314s00018011.1	PF00847.15	AP2	276	318	1.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.204
SRR1783600	control	0.189
SRR1783602	moderate drought stress	0.147
SRR1811619	moderate drought stress	0.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.531
DRR006520	Root Summer glycyrrhizin high producing strain	0.515
DRR006521	Root Winter glycyrrhizin high producing strain	0.070
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	1.231
DRR006524	Root Summer glycyrrhizin low producing strain	1.379
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.179
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.207

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.299
SRR2868004	Drought Stress (root)	0.175
SRR2967015	Control (root)	0.195

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.112
SRR9715740	Leaf	0.173
SRR9715741	Leaf	0.065
SRR9715739	Root	0.424
SRR9715742	Root	0.747
SRR9715743	Root	0.905

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.038
SRR8749028	MeJA induced 9h	1.416
SRR8749029	MeJA induced 9h	0.626
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.742
SRR8400027	Control - Root	1.263