Gene detail

Gene detail information of Glyur000314s00018010

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20780.1	0	Major facilitator superfamily protein
NR	XP_004514460.1	0	PREDICTED: probable polyol transporter 4-like [Cicer arietinum]
COG	YP_004596119.1	5.00E-94	sugar transporter [Halopiger xanaduensis SH-6]
Swissprot	tr\|Q0WUU6\|PLT4_ARATH	0	Probable polyol transporter 4
trEMBL	tr\|G7KIS7\|G7KIS7_MEDTR	0	Polyol/monosaccharide transporter 1 {ECO:0000313\|EMBL:AES74517.1}

Sequence

Transcript Sequence

>Glyur000314s00018010.1
ATGTTACCAGAAAACGGGAATGGGGAAATGGGGTTGTCTGGAATCNCCTTGGGAGCAAAGAACAAATACAAGAGGATGAAGAACTCTGAGCTCCCTGATGATATCGATGATGTTTTGCACCAACAGGAACAGGAAGAGAGGAGGAACAGTACCAGGAAATATGTTATCGCATGTGCCATCTTTGCTTCTCTCAACAATGTCCTTCTTGGCTATGGTATGCTTCCTTTGAAAAGTCTCCCCTTTGATTTTGTGGCTGCTGTTTCTTCATTTTTCGTTGACCTTGATGTAGGTGTTATGAGTGGGGCAGTTATATTTATGAAAGAAGATCTGAAGATATCTAAGGTTCAGGTAGAAATTTTGATTGGTATTCTGAGCATTGTTTCTCTACTGGGTAGCCTGGGTGGTGGAAGAACATCNGATATTATTGGTAGAAAATGGACAATGGCCTTAGCTGCAATTNTCTTCCAAATGGGTGGAATCACAATGACTCTTGCTCCTTCATATGCAATACTAATGGTTGGAAGACTTCTGGCTGGGATTGGAATAGGATTTGGTGTCATGATTTCCCCTATATATATTGCTGAAATATCACCAAACCTCACTAGAGGCTCTCTCACTACCTTCCCNGAGATTTTCATAAATATAGGAATCTTGCTTGGTTATGTATCCAATTATGCTTTTTCTGGCCTTTCAGCACACATAAGTTGGAGAATAATGCTTGCCGTGGGAATTTTGCCCTCAGTATTCATTGGATTTGCTCTCTTCGTTATTCCTGAGTCACCAAGGTGGTTGGTAATGCAGAACCGAGTCGAAGAAGCTAGATCAGTGTTGCTGAGAACAAATGAAAACGAGAAAGAAGTGGAGGAGAGACTTGCAGAGATACAACAGGCTGCTGGATTCGCCAATTCTGATAAGTATGAGGAGAAACCCGTGTGGCGTGAATTGCTGTTTCCTCCTCCTGCTCTTCGCCGGATGCTGATTACCGGGCTTGGAATTCAGTTTTTTCAACAGATCTCAGGAATTGATGCAACTGTGTACTACAGCCCTGAGATTCTCCAAGAAGCTGGGATTGAGGACAAGTCAAAACTTCTAGCTGCTACTGTTGCTGTGGGTATTACAAAGACCATTTTTATTTTGGTGGCCATCGTTCTTATTGACAAACTAGGTAGGAAGCCACTTCTCTTGATAAGCACAATTGGGATGACAGTTTGTTTGTTCAGCATGGGGGCAACACTTTCTATATTTGGACAAGGGCCTCTTGTGATTGCATTAGCTGTTCTATTTGTTTGTGGGAATGTGGCATTCTTTTCGGTTGGACTTGGTCCTGTTTGCTGGGTTTTGACATCTGAAATCTTCCCTTTACGGGTGCGCGCTCAAGCTTCTGCACTTGGAGCCGTGGCTAATAGGGTCTGCAGCGGTATCGTAGCCATGTCATTCCTGTCTGTAGCTGAGGCAATTACTTTTTCTGGAACATTCTTTCTTTTTTCTGCTATTTCTGCTCTTGCCATTGCCTTTGTCTTCACACTAGTACCTGAAACCAAAGGGAAGTCATTGGAGGAGATAGAGATGATATTTCAGAATGAACATGAGAGTCAAGGAAAAGAAATGGAGCTAGGAGATGTTGAACAACTTGTGCAGAACAAAACTGGTTTAACAAATTAATATAATTTTGCCAACGCCTTTATATGACTCTTGATGGATTTTGTCATTCCATAGCTACACATATTTCACTTGTTATGTGTCTAAGGCTCTAAGCATCCTACACATGTGACTCTGGGAGGACTTTACTCGCATGGATATGATCTTCTGCGACCAGAGAATTTGAGATCTGAGTATGGGACATAAGAAAGCATGAAGACAAATTGCATTCTCATTGTATACACAAACTTTTCCTAGTTGTACAATTATTTTATTTCTTTGTCTCATTTAAGTCAATTATAGGATTGTATATGGAAGGGAGATTATTGGTGGAGATGATCTTGTCTCCACATGGTCCTTTGAGATGTTCCAAAGCAACTTATAGTACCATCATTATAATGTACTCCATGAGGGATGTATTCAGACGAAAATTCTTTAACAGATTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00314	41497	43896	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000314s00018010.1	PF00083.19	Sugar_tr	83	525	1.20E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.956
SRR1783600	control	2.957
SRR1783602	moderate drought stress	2.115
SRR1811619	moderate drought stress	2.120

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.043
DRR006520	Root Summer glycyrrhizin high producing strain	8.821
DRR006521	Root Winter glycyrrhizin high producing strain	1.087
DRR006522	Root Winter glycyrrhizin high producing strain	1.098
DRR006523	Root Summer glycyrrhizin low producing strain	4.656
DRR006524	Root Summer glycyrrhizin low producing strain	4.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.351
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.844

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.453
SRR2868004	Drought Stress (root)	36.733
SRR2967015	Control (root)	36.961

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.043
SRR9715740	Leaf	61.443
SRR9715741	Leaf	81.144
SRR9715739	Root	3.485
SRR9715742	Root	21.487
SRR9715743	Root	21.473

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.950
SRR8749028	MeJA induced 9h	5.870
SRR8749029	MeJA induced 9h	5.411
SRR8749030	Uninduced	5.381
SRR8749031	Uninduced	5.545
SRR8749032	Uninduced	3.221

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.842
SRR8400027	Control - Root	20.458