Gene detail information of Glyur000314s00018007 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38210.1 | 5.00E-93 | expansin A20 |
| NR | XP_003539911.1 | 4.52E-169 | PREDICTED: expansin-A16-like [Glycine max] |
| Swissprot | tr|Q9SZM1|EXP20_ARATH | 4.00E-116 | Expansin-A20 (Precursor) |
| trEMBL | tr|I1LS07|I1LS07_SOYBN | 2.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G12340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00314 | 31566 | 33178 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000314s00018007.1 | PF03330.13 | DPBB_1 | 64 | 150 | 1.60E-20 |
| Glyur000314s00018007.1 | PF01357.16 | Pollen_allerg_1 | 164 | 238 | 1.60E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.027 |
| SRR1783600 | control | 14.180 |
| SRR1783602 | moderate drought stress | 2.928 |
| SRR1811619 | moderate drought stress | 2.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.888 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.694 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.662 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.403 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.373 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.032 |
| SRR2868004 | Drought Stress (root) | 15.192 |
| SRR2967015 | Control (root) | 13.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.118 |
| SRR9715740 | Leaf | 0.045 |
| SRR9715741 | Leaf | 0.319 |
| SRR9715739 | Root | 10.508 |
| SRR9715742 | Root | 2.598 |
| SRR9715743 | Root | 3.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.883 |
| SRR8749028 | MeJA induced 9h | 11.900 |
| SRR8749029 | MeJA induced 9h | 18.954 |
| SRR8749030 | Uninduced | 0.269 |
| SRR8749031 | Uninduced | 0.286 |
| SRR8749032 | Uninduced | 0.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.086 |
| SRR8400027 | Control - Root | 29.456 |