Gene detail information of Glyur000314s00018005 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28250.1 | 2.00E-91 | expansin B3 |
| NR | XP_004514453.1 | 3.64E-168 | PREDICTED: expansin-B3-like [Cicer arietinum] |
| Swissprot | tr|Q9M0I2|EXPB3_ARATH | 7.00E-135 | Expansin-B3 (Precursor) |
| trEMBL | tr|A0A072TGG1|A0A072TGG1_MEDTR | 7.00E-168 | Expansin-like protein B1 {ECO:0000313|EMBL:KEH16659.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00314 | 20603 | 23775 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000314s00018005.1 | PF03330.13 | DPBB_1 | 84 | 160 | 3.20E-19 |
| Glyur000314s00018005.1 | PF01357.16 | Pollen_allerg_1 | 172 | 252 | 1.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.578 |
| SRR1783600 | control | 29.126 |
| SRR1783602 | moderate drought stress | 4.014 |
| SRR1811619 | moderate drought stress | 3.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.980 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.460 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.623 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.329 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.822 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.070 |
| SRR2868004 | Drought Stress (root) | 21.430 |
| SRR2967015 | Control (root) | 21.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.592 |
| SRR9715740 | Leaf | 2.516 |
| SRR9715741 | Leaf | 3.113 |
| SRR9715739 | Root | 9.495 |
| SRR9715742 | Root | 4.433 |
| SRR9715743 | Root | 6.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.628 |
| SRR8749028 | MeJA induced 9h | 5.880 |
| SRR8749029 | MeJA induced 9h | 3.565 |
| SRR8749030 | Uninduced | 0.371 |
| SRR8749031 | Uninduced | 0.171 |
| SRR8749032 | Uninduced | 0.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 137.264 |
| SRR8400027 | Control - Root | 102.271 |