Gene detail

Gene detail information of Glyur000313s00016922

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55580.1	9.00E-170	Regulator of chromosome condensation (RCC1) family protein
NR	XP_003544189.1	0	PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Glycine max]
COG	YP_002462041.1	1.00E-26	chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	2.00E-38	Ultraviolet-B receptor UVR8
trEMBL	tr\|K7M5A5\|K7M5A5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07160.3}

Sequence

Transcript Sequence

>Glyur000313s00016922.1
GCAAACAGAAGAAACCGCCAGAAAAATAAAAAGAGCGTTGGGTTGAGTCTGTTATTGTTGACCTTTTGGCTTTGTACGTAATTGTGAATTTGAGTTTCTGTTTTTTTTTTCCTTTTTCTTTCTCTTCTCGGAATCGTCATGGACAATGTCGAGGGAAAGAGAAGTGAAGGAGCGGAGGCTGAGTCAGCATTGCAAGTGGTGTACATGTGGGGTTACCTTCCAGGGGCTTTGCCGCAGAGAGCGCCGCTGTTGACGCCGGTTACCGTTAGGTTTCCGGCGTCTGGTTGTTCCTGGAAAGATGTTTGCGGTGGTGGCTGTGGATTCGCCATGGCTATCTCTGAGCAAGGGAAGCTCATTACTTGGGGNTCAACAGATGATCTAGGCCAAAGCTATGTGACATCAGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGACTCTATTGTAAAAGCTGCAGCTGGGTGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTATACACATGGGGATGGAAAGAATGTATTCCAACCGGGAAGGTATTTGGTGAACCATCAACAAGGGTAAGTCTTGAGAAAGAAGAGGCAGAAAGGCAGAGTTCATTGTCGACAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGGACTACTGGAGGTACCATCTCTAGTAACAGTGGAGAAGAAAGTACAAAGAGAAGGAGAGTATCTTCAGCAAAACAACCAGCTGAAAGCTCATCATCCAGTAATGATACTCTGACGGCATTCCCTTGTCTTGTCACGCTAAACTCAGGGGTAAGGATAACCAGTGTTGCTGCTGGTGGACGCCATACACTAGCATTGTCAGATATTGGACTGGTGTGGGGTTGGGGCTATGGAGGCGAAGGGCAGCTTGGTCTGGGTTCCAGAATACGTACTGTTTCCTCTCCCCAACTTGTTCCTTGTATTGATTCTTCTTTTTATGGNAAAGATAGATCTACAATATTGCCTCGAGGAAGCATGTGTTCAGAGGGACAGAATTTTAGAGTTCCAGGAAGTTATGTAAAGAGAATTGCTTGCGGAGGGCGCCATAGTGCAGTAATTACAGATGCTGGAGCTTTGCTCACTTTTGGTTGGGGACTCTATGGACAGATCTTATCAGCTAATCAGTGTGGGAAAGGGACTACGAATGATGAACTAAGTCCGACTTGTGTATCTTCCCTATTGGGTGTCCAAATAGAGAGAGTTGCTGCAGGACTGTGGCACACGGTCTGTACATCTGCTGATGGAAATGTGTACGCATTTGGTGGGAATCAGTTTGGGCAGCTCGGAACTGGTGCTGATCAAGCTGAGATACTACCAAGGCTAGTGGATTCCCCAAGCTTGGAAAATATGCATGCAAAGAACATATCTTGTGGTGCTCGTCACACTGCTTTGATAACAGAGGGTGGAAGAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTAATTGACCGTAACATTCCTTCTGAAGTCATCATNGAAGGTTGTATCCCTAAAAATGTTGCTTGTGGCTGGTGGCATACTCTTCTTCTGGCTGAGACGCCCACTTGATGTCATTGTTTCCAAGAGGCTCTTAACCCAATTTTGTTAGTTAGCAGTTCTTTGGCTAGGTAAATCACCAGTCACGTATATGTACATACAGTAGTTGTATATATGTGCGTATATGCTTGTATTCTTTCATGGTGACTGTGAATCACCATAAGTGGCTCTAGTAGTCAAGTATTTAACAACACCAAAGAGTGGCTCTAGTAGTCAAGTATTTAACAACACCAACGAGTGGCTCTAGTAGCCTAGGAAGGAAGTATTAGGTCCTTTCCACCTGTGTGACATTCTTCACCATGGTGTATATTTTAATTTATCGTGTAAACTATCCAGTATAACTTGATGCACTGAAAGGTGGTATGTGTGGGCATGTAAATATCGGGTAAGGGTTATCCTTCAAATTAGTGTATATGACCATTTTGATTTTACTATCTGTTTAGTGAAAGTAACTAGACTCCTTTAGTTGTTCCCTTTCTTTATAAAAGTCAGTGAGTAACCGAAAAGTAACTTCATAAAGGTATAGTAAAATGGATAATATCGCAGTGAAGACTAAACAATTTTAGACCGTGTTTAGCGAGGAAGAGTAAAAAAAGATCTTCTATTTAAATGGTAGTAGGATTGATAACATAAAGCACAATCACAGACTTCCAATTTGTGTTCTAAAATAGAATAATTTATTTTGAGCAAACACTACAACTAGTGTNCCAACACTACACTAGCGTCCCACTAACAAAAGCTGTCAAAACAAAACATAATGATCCCAGTCACAGAAGAAAAAAAACTCACGAGGGTTAATGAAATCCTCTAAGTAGCTTCTTATGCACCCATCCTCCAAAGTGAGGTACATGTTGAACAGGTGAAGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGGCAGTGGTATTGGTAAAGATCCAGGTGTTAGTACTGATGGCGGTAGAGATGGAGCCGGCGAGTTGGGTTGTTGTACTGTTATAAAAAGCTTTTGCCCAACATTGCAGTGATTGTGAACACCACTTATATACCATTTTCTTCCAGGAGTTGCCAATACAACAACATCACTTCCAGTAGACCATGCTTCACTTGGTGGAGGAACCGTACAGCTCTGGAATGCAGTCCCATTCACGTTAAAGACGTTGTCTTTTCCAACAGGGTAATTGAATACTGCAAAAAAATGAATATGGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00313	113732	120566	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000313s00016922.1	PF13540.1	RCC1_2	225	254	5.50E-07
Glyur000313s00016922.1	PF13540.1	RCC1_2	305	334	1.30E-06
Glyur000313s00016922.1	PF00415.13	RCC1	379	430	9.30E-11
Glyur000313s00016922.1	PF00415.13	RCC1	434	481	8.20E-11
Glyur000313s00016922.2	PF13540.1	RCC1_2	225	254	5.40E-07
Glyur000313s00016922.2	PF00415.13	RCC1	322	369	9.40E-11
Glyur000313s00016922.2	PF00415.13	RCC1	373	425	1.50E-10
Glyur000313s00016922.2	PF00415.13	RCC1	429	476	8.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.210
SRR1783600	control	2.368
SRR1783602	moderate drought stress	5.561
SRR1811619	moderate drought stress	5.177

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.285
DRR006520	Root Summer glycyrrhizin high producing strain	1.386
DRR006521	Root Winter glycyrrhizin high producing strain	130.940
DRR006522	Root Winter glycyrrhizin high producing strain	126.867
DRR006523	Root Summer glycyrrhizin low producing strain	0.477
DRR006524	Root Summer glycyrrhizin low producing strain	0.356
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.154

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.994
SRR2868004	Drought Stress (root)	54.160
SRR2967015	Control (root)	16.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.025
SRR9715740	Leaf	14.935
SRR9715741	Leaf	10.207
SRR9715739	Root	3.921
SRR9715742	Root	15.204
SRR9715743	Root	11.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.008
SRR8749028	MeJA induced 9h	1.235
SRR8749029	MeJA induced 9h	1.026
SRR8749030	Uninduced	0.663
SRR8749031	Uninduced	0.296
SRR8749032	Uninduced	0.844

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.277
SRR8400027	Control - Root	17.279