Gene detail

Gene detail information of Glyur000313s00016920.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39770.2	0	Glucose-1-phosphate adenylyltransferase family protein
NR	XP_004490906.1	0	PREDICTED: mannose-1-phosphate guanylyltransferase 1-like [Cicer arietinum]
COG	YP_644397.1	2.00E-54	nucleotidyl transferase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|O22287\|GMPP1_ARATH	0	Mannose-1-phosphate guanylyltransferase 1
trEMBL	tr\|Q6DW08\|Q6DW08_MEDSA	0	GMPase {ECO:0000313\|EMBL:AAT58365.1}

Sequence

Transcript Sequence

>Glyur000313s00016920.1
TGGCGCGTGAGTGTTGTTATATATATGAACTCAAAGATGGATGAGACCTGTTCGGGGCTTCTTCTTGTTCTTCTAGTTCTAGATTCCGACTCGACGTGTTGACTCGGTCTGGGTCGGGGTTTAAGCGCGACTCAGTTCTGAATCTCGATTTTGAATTCTCTCCCAAACGACACGCCACCCGGATCTAACTCCAGTGCGAGGAAAAACAAAGGGCATATCACAATGAAGGCACTGATTCTGGTTGGGGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGTTTCCCTAANCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTTAAGGCCATTGGAGTTACTGAAGTTGTACTAGCCATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAAGCAAATCTCGGCATTAAGATTACATGTTCTCAAGAAACTGAACCACTAGGAACTGCAGGCCCACTGGCTCTTGCTAGGGATAAGCTGATAGATGACTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAAGAAATGATTGAATTCCATAAATCCCATGGAGGAGAGGCTTCCATAATGGTAACAAAGGTTGATGAACCATCAAAATATGGCGTGGTNGTGATGGAGGAGACCACAGGGCAGGTTGAGAGATTTGTTGAAAAACCAAAGTTGTTTGTCGGTAACAAAATCAATGCTGGAATTTACCTATTGAACCCCTCTGTTTTGGATCGAATTCAACTGAGGCCCACCTCTATCGAAAAAGAGGTTTTCCCAAATATTGCTGCAGAGAAAAAGCTATATGCAATGGTCCTGCCTGGATTTTGGATGGACATTGGACAACCGAGGGACTATATTACTGGCCTGAGGCTTTACCTAGACTCATTGAGGAAGAAGTCTTCTTCTAAGTTGGCCAGTGGCCCACACATTGTGGGGAATGTCATTGTGGATGAAACAGCCAAGATTGGCGAGGGGTGTCTCATTGGCCCCGATGTCGCTATTGGTCCCGGCTGCATTGTTGAGCCTGGTGTTAGGCTCTCACGCTGCACAGTTATGCGAGGAGTCCGGATTAAGAAGCATGCTTGCGTATCCAGCAGTATTATTGGGTGGCATTCCACTGTTGGGCAATGGGCTCGGGTGGAGAATATGACTATCCTTGGAGAAGATGTTCATGTGTGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAGATCAAGTCAAATATTCTGAAGCCAGAGATAGTCATGTGAGGTCAATGTTGTTCAGTAAGTTATTGAAGTCTGAAATATGTCTGTTAGTTTCACTTGTTTTCCATTTTTCTTCACCCCATTTNTTTTCTTTCTCCCTACAGTGTACAAGTCAGTTTTTCGATTAGAATGAGTGATGCCANTACAATAACGAAGGGTCATAATCGTTGTAAAGGGCATAAGTTTGGTCTTCTGTGCAAAAGTTGTGTAATTTTTGATGCAAACCAAATACACCACACACACAAAAATGGATGAAAACAGAATAAGGAATGAAACCGTGTATTGTATTGATAACAGAAAGCATAAAATGCAGTGGGCAACAAGCCTTACTGCCCCAGAGCTATGCTCCTTCAGAGAACAAAATGTTCTCTGCCCATAACAACCCAATGACTTTCCAAGATACCCCTTCTCTCTCTACTCAATCCCTATATAACAGAAAACCTCACACCGTCACACACATGACCCATCCCTCTCTGCCACGTCAGAATGGTATTGGGCAGCTGATATGCTAAGCCCACTTGGGCCCACACTCTCATTTGAGGTCCTAACATTGCCACCCTCTTGAAAAATAGACTTGTCCTCAAGTCTGAGCTTGGGAAATTGGCTCTTCTTATTGAACTCTTTCTCCCATGTAGCTTTTTCCACAACCTTCCTTTCCAATTTCCACAGAAATAAGGAACCCAGACATGAAGAACTTCCAGGTCACCAGAGAGACTAGACATGGACATCAAAACAGAAACTGCAGCAACAACAGAGGGATTCTCTAGTGCCCCATAACAACATCCACCAAAAATTCTCCTTGTGCAATAGTCATTGAAAACCAAGTCCCTTTTCCCAGGATCCCACTGTCGGTAACTTGCCAAGCCAGCTTTAAGTAATTGAACCATCCACAAAGTGAGACTCCCAATGCCTATGAGTGACAACCTGCTGTCACTTTCTTTCAAACTCAGATGGATCACTACGTCATCAATCACCGTTCGAACCAAGAAAAAAGCAAGCCCACTTGAAGCCTCCAATATATCAACTGCTGCATCTTCAACAATTCCCTGCAACATGACTACTCCATTCCTTTTGGGCACACTTGTTTCCTTCTTTATGTCTTGAGCCTTCCCCTTGATGACAGGTTCAGAAAGAAGTACCACATTTTGGGTGGACAAGCACAGTAACATCCCAGTGTCTGGCAAAGTTTCCATATCTTCAACTTGAGCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00313	102912	107482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00966	GMPP	EC:2.7.7.13	Fructose and mannose metabolism	map00051
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000313s00016920.1	PF00483.18	NTP_transferase	2	228	2.90E-47
Glyur000313s00016920.1	PF00132.19	Hexapep	261	294	9.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	60.238
SRR1783600	control	60.391
SRR1783602	moderate drought stress	45.355
SRR1811619	moderate drought stress	45.141

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.864
DRR006520	Root Summer glycyrrhizin high producing strain	40.794
DRR006521	Root Winter glycyrrhizin high producing strain	37.613
DRR006522	Root Winter glycyrrhizin high producing strain	36.287
DRR006523	Root Summer glycyrrhizin low producing strain	41.666
DRR006524	Root Summer glycyrrhizin low producing strain	41.137
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.693
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.214
SRR2868004	Drought Stress (root)	60.862
SRR2967015	Control (root)	61.808

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.001
SRR9715740	Leaf	63.844
SRR9715741	Leaf	56.574
SRR9715739	Root	59.540
SRR9715742	Root	68.425
SRR9715743	Root	67.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.199
SRR8749028	MeJA induced 9h	41.137
SRR8749029	MeJA induced 9h	53.690
SRR8749030	Uninduced	68.959
SRR8749031	Uninduced	105.675
SRR8749032	Uninduced	96.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.618
SRR8400027	Control - Root	73.222