Gene detail

Gene detail information of Glyur000313s00016918

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39795.1	9.00E-48	Mitochondrial glycoprotein family protein
NR	KHN20903.1	2.26E-146	Hypothetical protein glysoja_009211 [Glycine soja]
Swissprot	tr\|Q8W487\|YB95_ARATH	2.00E-68	Uncharacterized protein At2g39795, mitochondrial (Precursor)
trEMBL	tr\|C6TER9\|C6TER9_SOYBN	1.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07130.1}

Sequence

Transcript Sequence

>Glyur000313s00016918.1
CAAAGGTTGAAGACGAAAATGGGGGGATTTTTACTCTCTCATTTTCAATTAAANCACTTTCCCTATCCCATAATTGAGTCTCATTGCTATCATCCAAATCAAGAGCTACCAAGAAGCATGAAATGAGTATTGCACACTTTTTATCGTACCTAGATAGATTCTGATGCAGTCCTTGGCTTCAACTCCAGCATCTACAAAAACACGATGAAGATATATTCGTATAAGTCGCAGCAGCATGATGAATAAAAAAACAGCATTGATAAAAATAAACACTCGCCTACACCGGAGAATCCGACACGGCGTCGTTTTTTGGTTTCGTTGTTGGGATCCGAATTCGGTCGCTGCTTCTGCCCCATTTGCGATTTTGAGTTTTCTTCTCAGCTCCACTAACCGAGTCTGAAAGAGNGAGAGGGGGTTAGGGTTTACACAGAGCGGGAAATCAATTGCGAGGGGAAAACTTTTTTTTTTTTTGGTCAAAGCGAGGGGAAAACTTAGATTAGGGCTTTTAAATAATAAACAATTGGGCTGTCTCAAAAAAAAGGGCCAAAAAGTTGATTGATGGGCCTTAAGCCTAGGTTTATAAGTTAGGCTATGGAAAATNTCCCAATCCTTGTAAAACCCTAGCAAAACCCTTGTCTGCGTTTTTTCCTGAAAAAAAAAATGGCGTTCAGCACGATTCTTCGCAAGTCGAGTTCTTTCGTGAGGCCTCTTGCTTTTGCGGGTCANTTGGCGAGGAAGACCCAACCGGGTCATCGCGCCGTGCTTTTCTCNGCCGTCAACCAGTACCGGTACGAGGATTCGTTAGTTCCGAGGTTTCACTTTTCTTCTGTGGCTGTCAAGAACAAACCCACCTCCGACGAAAATCTGCTCCGAATCATCGAATCCGAAATCAATTGTGCCGAAGAGACCGACGATCATGACACCGTTGAGGAGGTTCCGGGTAATTTTCCATTTAAGATAGTGGATAGTCCAGGACAACAGACTATAACACTTGAAAGAACTTATCAAGGTGAAGAAATCAAGGTTGAGGTACACATGCCTGATCTAGTTACTGGGGAAGATAATGATGTTGATGATGACAATGATGATGGTAGTGAGAGAGCATCTCAGTCAAGTGTTCCACTCTCAGTGAGTGTTTCTAAGAAGGGTGGACCCATTTTAGAGTTTAGTTGTGTGGCTTACCCTGATGAGATTGTTATTGATGGAATGTCTGTTAAGAATCCTGATCTTGCTGAAGATCAAATTCCTTATGAGGGACCAGACTTCCAGGAATTGGATGAGAGCCTGCAAAAGTCTTTCTTGAAGTACTTGGAAATTAGAGGAATCAAACCTAGCACAACCAATTACTTGCATGAGTATATGATCAACAAGGACAGTAGAGAATACTTGGTGTGGTTGAAAAAGCTCAAAAGTTTCATTCAGGCATGAGCATTGACATCTCTGTATGTGCTTACTTACAACCATGGTTTGTAGGAAGCAAGCACGGATGATGCTCAGTTTTTGTCTAATGTCATTTCATTTGCGTATACATTTGAAGGGAAAGATGATCTGATATCATATCATTGTGGTTTAGTAGTAGTTCCTATTAAAGGTGCATTATGGCTTAAAATGTTTGGTTATTTTATTTTATTTAGACTTAATTGTATTTTTGTTTCCTATAGTTTTACAAATGCATAATTTTAATCACCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00313	91824	93795	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005759 mitochondrial matrix

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000313s00016918.1	PF02330.11	MAM33	73	253	1.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.330
SRR1783600	control	22.543
SRR1783602	moderate drought stress	16.620
SRR1811619	moderate drought stress	16.605

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.004
DRR006520	Root Summer glycyrrhizin high producing strain	31.723
DRR006521	Root Winter glycyrrhizin high producing strain	12.849
DRR006522	Root Winter glycyrrhizin high producing strain	12.607
DRR006523	Root Summer glycyrrhizin low producing strain	30.117
DRR006524	Root Summer glycyrrhizin low producing strain	29.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.519
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.760

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.258
SRR2868004	Drought Stress (root)	17.918
SRR2967015	Control (root)	14.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.041
SRR9715740	Leaf	12.777
SRR9715741	Leaf	6.634
SRR9715739	Root	6.999
SRR9715742	Root	19.899
SRR9715743	Root	17.410

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	79.379
SRR8749028	MeJA induced 9h	32.027
SRR8749029	MeJA induced 9h	40.683
SRR8749030	Uninduced	7.571
SRR8749031	Uninduced	6.372
SRR8749032	Uninduced	5.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.031
SRR8400027	Control - Root	23.587