Gene detail information of Glyur000313s00016916.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03795.1 | 3.00E-20 | Exostosin family protein |
| NR | XP_004504449.1 | 2.00E-138 | PREDICTED: probable glycosyltransferase At5g20260-like [Cicer arietinum] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 2.00E-23 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|G7K222|G7K222_MEDTR | 3.00E-130 | Exostosin family protein {ECO:0000313|EMBL:AES99475.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00313 | 83984 | 84925 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000313s00016916.1 | PF03016.10 | Exostosin | 74 | 185 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.028 |
| SRR1783600 | control | 1.748 |
| SRR1783602 | moderate drought stress | 4.062 |
| SRR1811619 | moderate drought stress | 4.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.402 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.657 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.651 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.539 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.313 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.582 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.761 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.967 |
| SRR2868004 | Drought Stress (root) | 2.203 |
| SRR2967015 | Control (root) | 3.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.294 |
| SRR9715740 | Leaf | 3.067 |
| SRR9715741 | Leaf | 1.725 |
| SRR9715739 | Root | 4.868 |
| SRR9715742 | Root | 2.536 |
| SRR9715743 | Root | 2.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.363 |
| SRR8749028 | MeJA induced 9h | 1.769 |
| SRR8749029 | MeJA induced 9h | 0.775 |
| SRR8749030 | Uninduced | 0.436 |
| SRR8749031 | Uninduced | 0.486 |
| SRR8749032 | Uninduced | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.315 |
| SRR8400027 | Control - Root | 2.808 |