Gene detail information of Glyur000313s00016912.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39830.1 | 2.00E-180 | DA1-related protein 2 |
| NR | XP_003616507.1 | 0 | LIM and UIM domain-containing [Medicago truncatula] |
| COG | YP_007039105.1 | 1.00E-08 | hypothetical protein BN6_49630 [Saccharothrix espanaensis DSM 44229] |
| Swissprot | tr|Q0WSN2|DAR2_ARATH | 0 | Protein DA1-related 2 |
| trEMBL | tr|G7K212|G7K212_MEDTR | 0 | Zinc ion-binding protein {ECO:0000313|EMBL:AES99465.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00313 | 41157 | 48829 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000313s00016912.1 | PF00412.17 | LIM | 133 | 186 | 5.20E-08 |
| Glyur000313s00016912.1 | PF12315.3 | DUF3633 | 282 | 479 | 1.80E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.167 |
| SRR1783600 | control | 1.163 |
| SRR1783602 | moderate drought stress | 3.543 |
| SRR1811619 | moderate drought stress | 3.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.641 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.630 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.374 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.309 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.209 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.535 |
| SRR2868004 | Drought Stress (root) | 8.800 |
| SRR2967015 | Control (root) | 7.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.080 |
| SRR9715740 | Leaf | 13.607 |
| SRR9715741 | Leaf | 7.083 |
| SRR9715739 | Root | 1.675 |
| SRR9715742 | Root | 3.926 |
| SRR9715743 | Root | 3.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.052 |
| SRR8749028 | MeJA induced 9h | 0.054 |
| SRR8749029 | MeJA induced 9h | 0.029 |
| SRR8749030 | Uninduced | 0.323 |
| SRR8749031 | Uninduced | 0.037 |
| SRR8749032 | Uninduced | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.381 |
| SRR8400027 | Control - Root | 3.406 |