Gene detail

Gene detail information of Glyur000313s00016908.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02030.1	3.00E-53	POX (plant homeobox) family protein
NR	XP_008233506.1	3.85E-81	PREDICTED: BEL1-like homeodomain protein 9 [Prunus mume]
Swissprot	tr\|Q9LZM8\|BLH9_ARATH	1.00E-61	BEL1-like homeodomain protein 9
trEMBL	tr\|B9SE26\|B9SE26_RICCO	1.00E-79	Bel1 homeotic protein, putative {ECO:0000313\|EMBL:EEF38169.1}

Sequence

Transcript Sequence

>Glyur000313s00016908.1
ATGGGTCCCTTTACCGGTTATGCTTCCATCTTAAAGCAGTCAAGATTTTTGAAGCCTGCTCAACAGCTCCTTGAAGACTTTTGTGGTAGTTGGAGGGATTCAAAACTCACGTGCATGCTAGAGGAGGTATACAACAAGTATACCCTGTACTACCAGCAGATACAATCAGTGGTGGCATCATTTCAGAAAGTTGCTGGTCTTGGAAATGCCACTCCTTACATATCATTTGGTATCAAAACCATTTCTAAGCATTTTGGATGCTTAAAGCTTGCTATATATGATCAACTTCAGTTCACAACAAGCAAGAGTACTCCTGCAGCTAATTACAATTTTAGTAAAAAGGAAATTTTGAAGCATCCAACATTTGAAAAAGGGCTTCCAGATCATGCTGTAGCTTTGTTAAGGAGATGGCTCTTTAAACACTTCTTACACCCTTATCCTACGGATTCTGAAAAGGATACACTGGCTCAACAAACTGGTCTTTCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTGAGAATCTGGAAGCCCATGGTGGAAGAGATGCATATGCTTGGGGATCAGCAGGCTCAACTAGTGGAAGTGAGCCATAAAGTGAGCAGGCCTGCTGTTGGCCCACTTGCTGCATTACACAAGCCCATGTGAAAATCCTGCCCCATCCAAAACAAGAAGAAATCTTGACCAAAAAAACAAAAAGAAAATCATCTCAAGGGATGACAAGACTCAAATTCAAGAGAGGGGTTTATCTGTTGACCCAAAAAAAAAGAGGGGTTTACAAGTGAGGTTATGTGGGTTGTATCACATTTAGTTCTTCAACTAATTCCCACAATGGATGGGATAGGAGTTTGGGGGGAATTAAAGCACGTGGAAGTAATGGGCTAAAACACCACCACAATTTGGGAACTNTCTAATTATTTAGCGTTAGATTCACTAGACCATCATGAACTGCCAACAGATGATGTATAACATCGTGGATTCATATCAAGGAGGCTCAATATTATGACTTTGATTAATGGCTTTTAATGGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00313	26317	29121	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000313s00016908.1	PF07526.6	POX	31	93	4.50E-22
Glyur000313s00016908.1	PF05920.6	Homeobox_KN	137	176	2.10E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.627
SRR1783600	control	2.590
SRR1783602	moderate drought stress	0.492
SRR1811619	moderate drought stress	0.458

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.513
DRR006520	Root Summer glycyrrhizin high producing strain	3.382
DRR006521	Root Winter glycyrrhizin high producing strain	4.389
DRR006522	Root Winter glycyrrhizin high producing strain	4.458
DRR006523	Root Summer glycyrrhizin low producing strain	6.248
DRR006524	Root Summer glycyrrhizin low producing strain	6.369
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.906
SRR2868004	Drought Stress (root)	1.957
SRR2967015	Control (root)	1.474

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	1.168
SRR9715742	Root	3.363
SRR9715743	Root	2.258

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.897
SRR8749028	MeJA induced 9h	0.074
SRR8749029	MeJA induced 9h	0.058
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.475
SRR8400027	Control - Root	6.535