Gene detail information of Glyur000312s00022013 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02990.1 | 1.00E-57 | ribonuclease 1 |
| NR | NP_001238449.1 | 8.59E-85 | uncharacterized protein LOC100305644 precursor [Glycine max] |
| Swissprot | tr|P42813|RNS1_ARATH | 1.00E-71 | Ribonuclease 1 (Precursor) |
| trEMBL | tr|C6SW07|C6SW07_SOYBN | 3.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G04820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00312 | 200884 | 201762 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000312s00022013.1 | PF00445.13 | Ribonuclease_T2 | 3 | 124 | 3.90E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.332 |
| SRR1783600 | control | 4.374 |
| SRR1783602 | moderate drought stress | 2.069 |
| SRR1811619 | moderate drought stress | 2.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.014 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.571 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.514 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.092 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.196 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.696 |
| SRR2868004 | Drought Stress (root) | 1.478 |
| SRR2967015 | Control (root) | 4.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.856 |
| SRR9715740 | Leaf | 2.742 |
| SRR9715741 | Leaf | 6.217 |
| SRR9715739 | Root | 4.237 |
| SRR9715742 | Root | 5.330 |
| SRR9715743 | Root | 3.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.075 |
| SRR8749028 | MeJA induced 9h | 0.517 |
| SRR8749029 | MeJA induced 9h | 0.487 |
| SRR8749030 | Uninduced | 0.134 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.442 |
| SRR8400027 | Control - Root | 13.346 |