Gene detail information of Glyur000312s00022011 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14220.1 | 3.00E-78 | Ribonuclease T2 family protein |
| NR | XP_003613795.1 | 5.09E-131 | LCR-like protein [Medicago truncatula] |
| COG | YP_422063.1 | 6.00E-12 | ribonuclease I [Magnetospirillum magneticum AMB-1] |
| Swissprot | tr|P42815|RNS3_ARATH | 2.00E-96 | Ribonuclease 3 (Precursor) |
| trEMBL | tr|G7KFA7|G7KFA7_MEDTR | 2.00E-131 | Ribonuclease T2 family protein {ECO:0000313|EMBL:AES96753.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00312 | 189855 | 191982 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000312s00022011.1 | PF00445.13 | Ribonuclease_T2 | 27 | 127 | 1.70E-33 |
| Glyur000312s00022011.1 | PF00445.13 | Ribonuclease_T2 | 130 | 189 | 4.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.585 |
| SRR1783600 | control | 0.802 |
| SRR1783602 | moderate drought stress | 0.480 |
| SRR1811619 | moderate drought stress | 0.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.839 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.844 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.157 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.391 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.573 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 75.101 |
| SRR2868004 | Drought Stress (root) | 46.604 |
| SRR2967015 | Control (root) | 58.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.320 |
| SRR9715740 | Leaf | 0.281 |
| SRR9715741 | Leaf | 0.155 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.492 |
| SRR9715743 | Root | 1.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.088 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.220 |
| SRR8400027 | Control - Root | 7.582 |