Gene detail

Gene detail information of Glyur000312s00022009

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14205.1	1.00E-49	Ribosomal L18p/L5e family protein
NR	AFK37698.1	2.28E-84	unknown [Lotus japonicus]
COG	YP_007419234.1	1.00E-12	RplR [Bacillus thuringiensis serovar kurstaki str. HD73]
Swissprot	tr\|Q8SAY0\|RK18_ORYSJ	8.00E-15	50S ribosomal protein L18, chloroplastic (Precursor)
trEMBL	tr\|I3SBQ6\|I3SBQ6_LOTJA	9.00E-85	Uncharacterized protein {ECO:0000313\|EMBL:AFK37698.1}

Sequence

Transcript Sequence

>Glyur000312s00022009.1
GACTAATCTCATGTAATTTTTCGGGAATTGAAATGATAGTTTACTCACCGAGAAACTTTTCGTGAGACATCATGCGTCATTTGATTTTTCATCCATACACGCGCGCGCCGGAGAGCTAACATACACTACAAGGATTGAAATTCAGTGTTGAAAAAAGGGGTTGGCGCCTGGCGGTTTCAACTTTCATTGGAGCCTAGTAACCAAAAGGTAAAATTCACACGGTACTTGAGACTTGTAAATGTACAATATGGCTCAAGTGAATGCTCCAGCACCACTACAATTTAGGAATTCTGCTATCTTTGGAACCATCCCAAAACCATTATTTTGCCTTCAAGCACAAAGTAGAAGTTTAACCAAGAAACCATTTGTAATAGAAGCTAGGGCAAATGCTAGAAAGGAAAGTGCTAAAATTCGAAACAGAAAGATGCAGAAAAAGGAAAGGAAGTGGATTTCAGTGGACCAGTGGGTTGTTACAGTGCTGGTGCGCGGAACAGTGGCTATTGTGGAGGTGGTCCGACGAGGGCGGTTTAATGGAACAGCGACACATCCAAGGCTTTCAGTGTTTTGCTCAGACAAGCAATTGTATGCAATGCTTGTAGATGACAAAAATAAGAAGTGTTTATTCTATGGAAGCACGCTGCAGAAATCATTTCGACAAAATCCTACCTGTAGNGGTGTTGAAGCTGCTCAACGTGTTGGGGAGGCACTTGTCAAAGCCTGTGTCAATCTGAACATAAATGAAATATCATCCTATGATCGCAATGGCTTCGGTCGCGGACAAAGACTAGACGCCTTTGAGATTGCCATTTCCAGTTATGGATTCTTGCCGAGATAGGTCTGCAACCGCTAGTGTTTCTCTCTTGTCAAATACATATGAAGCACAACAATGTAGAAGTCGATCTTAGTGGGATAGGACTATGATTGCTTCGCTAGAATAGCAAGTAGCAATCTCGGTTGATTGATCATTACTTTGCACATTTTTATGCCAAAGTAATTTTCTTGATGTAAGGTTTTGTGCACAAAATTTAGATGTCATGACCGGTGGAGCAAATTTGAAGGATATTACATGTAATTACCCGTATTTTTTTCTTTTGACAAATTCTATGGGTGAGAATGTAGACATGGCATCTTGCAATGTTTTCAGTTCTCTCCTCCAAGGATCACGCAACATCTTGTTTGAATATGGCTATGGAGAGGATGGTTTAGCAATAGATTTGTGTTGTCTTTATTAATTATATACCTACAAATGGAACATTATATATCATAATCCACATGATTTAGTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00312	164768	169158	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000312s00022009.1	PF00861.17	Ribosomal_L18p	92	187	8.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.403
SRR1783600	control	2.443
SRR1783602	moderate drought stress	2.785
SRR1811619	moderate drought stress	2.702

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.243
DRR006520	Root Summer glycyrrhizin high producing strain	4.241
DRR006521	Root Winter glycyrrhizin high producing strain	7.435
DRR006522	Root Winter glycyrrhizin high producing strain	7.969
DRR006523	Root Summer glycyrrhizin low producing strain	5.054
DRR006524	Root Summer glycyrrhizin low producing strain	4.635
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.244
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.865
SRR2868004	Drought Stress (root)	4.248
SRR2967015	Control (root)	4.912

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.233
SRR9715740	Leaf	10.524
SRR9715741	Leaf	7.045
SRR9715739	Root	0.975
SRR9715742	Root	1.189
SRR9715743	Root	1.842

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.559
SRR8749028	MeJA induced 9h	2.988
SRR8749029	MeJA induced 9h	2.920
SRR8749030	Uninduced	3.047
SRR8749031	Uninduced	2.452
SRR8749032	Uninduced	1.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.481
SRR8400027	Control - Root	7.279