Gene detail

Gene detail information of Glyur000312s00022000

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14185.1	7.00E-154	Glucose-methanol-choline (GMC) oxidoreductase family protein
NR	XP_003613819.1	0	(R)-mandelonitrile lyase [Medicago truncatula]
COG	YP_007093192.1	3.00E-39	glucose-methanol-choline oxidoreductase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9SSM2\|MDLL_ARATH	8.00E-118	(R)-mandelonitrile lyase-like (Precursor)
trEMBL	tr\|G7KGL1\|G7KGL1_MEDTR	0	Glucose-methanol-choline (GMC) oxidoreductase family protein {ECO:0000313\|EMBL:AES96777.1}

Sequence

Transcript Sequence

>Glyur000312s00022000.1
CCTCAAGGAAACAGACAATGGCACATGACTTCAGATGTTAAGGAAGTGTCAGGTAAGTCTTATGACTACATTGTAGTTGGGGGAGGAACATGTGGCTGTCCATTGGCTGCTACCTTGTCAGAGAAATTCTCTGTNCTACTGATAGAAAGAGGTGGCTCACCATATGGGAACCCTTTAGTGACAGATAGGAGATACTATGGTTTCCCATTGATTCAGACACAAGACAACAACAAGAAGCACATGTCAGTAGCACAAAGTTTCACATCACAAGATGGGGTTGGAAATGTCAGAGGAAGAGTTCTTGGAGGATCAACAGCTATAAATGGGGGATTTTATAGTAGAGCAAGTGAGGAGTTTGTTGACAAAGCTGGTTGGGACAAGAAACTAGTGAAAGAAGCTTATGAATGGGTGGAATCTAAGGTTGTCTTCCCTCCCTTTTTTCTCACCCCATGGCAGTCTGTTGCTGAATTCAGCCTCCTTGAAGCAGGGATTTTGCCATACAATGGCTATAGCTTGGAACATCTCAAGGGGACCAAGATTTCTGGGAGTGACAAGAATGAAACCCGGGCCAAGGGTATAAGGTTCATCAAGAGTAATGGCAGCTTGGATGAAACCCATGAAGCCTACATCAGGAAACCCAAGAGNTCAAGCTCAACAAGTGGTGATGTGATATTGTCAGCAGGTGCATTGGGTAGCCCACAACTTCTGCTTCTAAGTGGCATAGGGCCAAAAGAACAATTGAGGAGGTTCAACATTCCACTAGTGCTTGACATGAAAGGGGTTGGGCAAGGAATGCAAGACAACCCTTGCATAGCAATCTTGGTGGATTCTAAGCCACAGAATAGGCTTCCTGATCCACCACAAATTGCTGGCATAACAAATGACTTGAAAATCATAGTTGAAGCATCAATAATTCCTCTAAGTTCCAATGCATCNAGGGTTAATATTGCTGCCAAGATAGCAATGCCCTTCTCTAGAGGGATGCTTGAACTGAACAACACAGACCCCAGGTTGAACCCTTCTGTGAGATTCAACTACCTAGCAAATGAAAAGGACATGGAAGAATGTGTCAAGATGACACAACTGCTTAACCGAATTGCAAGGTCCAAGTCTATTGCAATTTTCCTNGGTGAGTCAAGGCAAAACAAATTGGCATCCACTGATCTTGATCTGAGGAAATTTTGCAAGAGAAATGTAAGAACCATCTATCACTATCATGGGGGTTGCAGGGTTGGATCAGTTGTTGATAAGCACTACAAGGTTTATGGTGTAAAGGGATTGAGGGTATTGGATGGCTCAACTTTTTCAGATTCACCAGGCACAAACCCTATGGCCACACTTTTGATGCTAGGAAGGTACCAAGCAATCAAGATTCTNGGAGAGAGGGAAGCAGATTCTGGTTTAGAAGCCAACAAAGAAAACACATAAATGAACTCCTTGTTGGTTAGACTTAGCTGTGTGCAAATTCAGTGTGTGAAAAAATAAGNCAGCACTTAGGAGCCTAACACAGTGTTGAGTGTGCTTTGAAAATTCAGAGTTATATTTTTGTTACAAAGTAAAATTATTTCATTCCCCTCTTCAAAATTCCTCTAATTAACTTCGATCCAGAAAATGAGAACACCACCTTCATGATTCTCTCCTTTTTTTTTGTGGGGAGGGGGGTATTATTAACTTTTAACCATTCGATTGATAAATAAGAGATGAGAGAAAAAAAATCATCTTATTTATTCCCACAACATGTAACAACAATTTTGTGCATTTGTGCCTGTACATATTTTTCTTCATCAAATTGAAAAGAAAAAAAAAACCATTCTACCCAAAAAAAAATCCTCATCAACTCTCTACCTCAGCATCACCTCTAGGATCACTTGATGAAGAATCACTTGAATCACCACCAGAAGGTGAAGCTACTTCTTGATTTTGATCCTGGCTTCTCCTACTTCCATTGAAAGAGAAACTAACCCAAACTTCTCCATTACCAACCCTCCTCCTCTCTCCTCCCCCTTCTTCTTCTTCTTCTTCTTCCCTCTTCTTCCCTTCATCAATAGGCATCTCATATCTACAAACAGGGCAAGACCCATGAATCCCAAGCCACTTCTCAATGCAACTACAATGAAACCTATGCTTACATGGCATCTCCTTCACCACCCCACCAACCTCAAACTCCTCCAAACAAACAACACACTNTCCTCCATCATCGTCTTCACCAATTTCAACGCTTGGCAAGGCCTCTATTGATTCCTTTGTAGCCGGTGGAAAACCACCCTTTGTGGTGTTGCTTCCNATTTCACGGAACAGAGCCTCTAGGCTTGAAACCCCATCAATCACCACCATGCCCTGTGTGAAAGGGTTCACCAATATGATTCTTTGACGCTGGGAACCTTCAGTAGTATCAGATTCCTGATCTGGGTCTTCCCTATCTCCCCTTAGAGAAGCCTCTGAGTAGCCAAAGAGGAAGGGCAAGAACAGAGACATTGACATGTCTCTGTTTCTGACTAGCCTTTCAAACAGAGAGGAAATCTCAGATACTTCAGGCTCAGAAGCCATCAATTCAAAACGCTGAGAGAGAAAGAAAAAACGATCTATTGGACACAGAGAGAGAGAGGTCAAGGGTGTTGCAGAATTCAGAGGAATTGGGAATTATTAGAATGAAGAGGGAAGGGGTGGAAGTGAAGTGAATATAAGGAGAAAGAAACAGAGGAGATGGATTAAAAGGGGTTGCGCCCACTGATAATCAGAGAAAGTTGTGGAAGGATCTGGAACATTGTTTTGGAAGTGCATGTGTTGTTATTTGTTTATCCGTGTGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00312	120179	123630	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000312s00022000.1	PF00732.14	GMC_oxred_N	21	128	2.10E-12
Glyur000312s00022000.1	PF00732.14	GMC_oxred_N	184	270	2.70E-13
Glyur000312s00022000.1	PF05199.8	GMC_oxred_C	323	451	1.70E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.659
SRR1783600	control	5.753
SRR1783602	moderate drought stress	5.148
SRR1811619	moderate drought stress	5.700

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.490
DRR006520	Root Summer glycyrrhizin high producing strain	25.921
DRR006521	Root Winter glycyrrhizin high producing strain	128.494
DRR006522	Root Winter glycyrrhizin high producing strain	124.678
DRR006523	Root Summer glycyrrhizin low producing strain	8.216
DRR006524	Root Summer glycyrrhizin low producing strain	8.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.541
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.286
SRR2868004	Drought Stress (root)	24.071
SRR2967015	Control (root)	21.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.285
SRR9715740	Leaf	3.604
SRR9715741	Leaf	2.078
SRR9715739	Root	3.830
SRR9715742	Root	7.544
SRR9715743	Root	6.853

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.681
SRR8749028	MeJA induced 9h	28.515
SRR8749029	MeJA induced 9h	26.439
SRR8749030	Uninduced	3.484
SRR8749031	Uninduced	10.898
SRR8749032	Uninduced	18.848

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.584
SRR8400027	Control - Root	16.718