Gene detail

Gene detail information of Glyur000312s00021994.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26780.2	3.00E-63	myb domain protein 117
NR	XP_003613837.1	1.13E-149	Myb-like protein AA [Medicago truncatula]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	4.00E-37	Transcription factor MYB44
trEMBL	tr\|G7KGM9\|G7KGM9_MEDTR	4.00E-150	Myb transcription factor {ECO:0000313\|EMBL:AES96795.1}

Sequence

Transcript Sequence

>Glyur000312s00021994.1
ATGGCCAGCTATAGCAGCAAGTGTTATATGATGATCTCTTCATCACAAGAAAACCAAAATGGCCTCTCCTGTAATTACCCTTCTTCCTCCACTTCCCATTCTTCTTCTTCTTCTCGTTTTCCTTCTTCTAATTCATTCCAATCACCTTCCATGGGAATGGTCTATCCAGACATGGGATCTCTCTCTCTTGCCTCCAACAANAGGATGGAAAGTGGGAGTACAACAAGCTGGACTTTTCCATTTATGAGGGAGTGCCTAATTTCAAGAAGCTTTCATGAGGAACAACAACAACCCAACAACAACATAGAAGATGATAGAGTTTCTGATTGCAGTGATATTGATATTGGGGTTGCAGGGGAAAACAGCACTGAGAAAATTAATGCTAGTAGCTTTAATGAAGAGAATAACCCTAATGAGAATCCTGGAAGCAGCAAAGAGGGAGATAGTAGTGGAGGAGGACAGTCTAATAATAAACTCTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTGAAGGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATAGCTGAGAAGTTGGAAGGAAGATCAGGCAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCAAGGATTAATAGGAGAGCATTCACAGAAGAAGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGAAACAAATGGGCCATGATTGCAAGGCTATTTCCAGGGAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATGCAGTGCTTACAGGAGGAGGAGATTGATGAGCCAATCTGTTGTTTACAGATCAAGATCAATGGAGCAGCAGCAGCAAAATCCAAGCTTTAATGTCATTGCCACAAAGGAAACAGAACCACCANCATCACCCTTTTTCCCACTCAGTAGTAATAATATGGCCATTTTCCCATATGCTGCAGCAACTGCAACCTTCCAAGGAGGAGCTCCTCTTGGTGGTGGTGGGGTTGAGTATGGATTAAATGTTTCAACCCACATGAGTGGTGGGAGAGAAGCAATGTTGTCAAGAAGTGAACAGGCCCCGCCACATGTTGCAGCCTTGTATTCTCAATCTCAACAGGCACCATATGATTTCTTCTCTGTTGGTGCTACTAGAAGCAATGACATGGTGGGAGAGTCTTTCAATCAGATCAGATACTGGGATGGGACTAATGGTAGTGAATATCATCAACAACAAGAACAACTATCTGGTTTCTACCCTCATTATACCCAACAATATCTGATGGCAATACAACAAACAATTAACAGTCACAATTTTCACAGTAGTTTGATCTCATCAAATTCCTCAGCATCAGCAGCATCAACAACAGCAGCAGCAACACCTCATGTTTCTGCAGAAAACAGAGAAAAAGTCCTGCTGATTAGTGACTACCCCCAAGATAATGCTGATGCTGATGCTGTTGTTGTTCCACCTCAATTTTTTGACTTCCTTGGAGTAGGTGCAACCACNTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00312	61474	63637	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000312s00021994.1	PF13921.1	Myb_DNA-bind_6	165	225	5.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.033
SRR1783600	control	0.048
SRR1783602	moderate drought stress	0.171
SRR1811619	moderate drought stress	0.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.016
DRR006522	Root Winter glycyrrhizin high producing strain	0.061
DRR006523	Root Summer glycyrrhizin low producing strain	0.071
DRR006524	Root Summer glycyrrhizin low producing strain	0.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.024
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.043
SRR9715742	Root	0.000
SRR9715743	Root	0.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.262
SRR8749028	MeJA induced 9h	0.164
SRR8749029	MeJA induced 9h	0.137
SRR8749030	Uninduced	0.005
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.016
SRR8400027	Control - Root	0.083