Gene detail

Gene detail information of Glyur000312s00021991.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03050.1	2.00E-86	Mitochondrial transcription termination factor family protein
NR	XP_003613843.1	4.32E-163	hypothetical protein MTR_5g041630 [Medicago truncatula]
trEMBL	tr\|G7KGN5\|G7KGN5_MEDTR	2.00E-163	Transcription termination factor family protein {ECO:0000313\|EMBL:AES96801.1}

Sequence

Transcript Sequence

>Glyur000312s00021991.1
ATGGCGATAATCGAGCTGTGCCCCCAAACATTCCTCTTCTCCCAAAACCCAATCCCAACAAAACTCTTCCAAAACCCTAACCTCAACCTCAGAAGCAGCAACGCACTTTGTCATTGTCATCAGAATCTGAAATCAATCACTCAATTTTCCCACCAACCAAACACAATCTCAACCGATCGTGGCCTCATTTTCCGGGAAAAAGTGCTCTACCTCGAGAACCTTAAAGTGAACCCAGAAAAAGCGTTCCGAGAAAACCCCACCCTCCGAACGTGCCCATTGGGTACCCTAAAATCCGTTGAGCGATGCCTCTCCTCAATGGGGATACACCGCAGCGACATGGGTCGAATCCTCGACATGCTCCCGGAGCTTCTCACGTGCGACCCACACGGTGACATCTACCCCATCTTCGATTTCCTCCTCAANGAGGTTCGAATCCCTTACCCCGACGTTCAAAAATCGATCTTGCGGTGCCCCAGGTTGCTGGTTTCCAGCGTGGAGCACCGGTTGAGGCCATCGCTGTGTTTTCTGAAGGAATTAGGGTTCGTTGGGCCCCACTCTCTCACGTGCCAGACTACACTGCTTTTGGTGTCCAGCGTGGAGGACACCCTTTTGCCCAAGGTGGAGTTTTTGAGGGGTTTGGGGTTCACACGTGTGGAAGTTTCCAACATGGTCGTTAGGTCCCCTGCTTTGTTGACGCTGAGCGTTGCCAATAATTTGGTGCCAAAAGTGGAGTTTTTCTTGAAGGAGATGAATGGGGACCTTGCTGAATTGAAGAGGTTCCCTCAGTATTTCTCTTTTAGCCTTGAAGGGAGGATTAAGCCGCGCCACGCCATGCTGGTTCGGCATGGCTTGTCCCTTCCTTTGGAACATATGTTGAAGGTTAGTGATGGCGGGTTTGATGCTAGGTTGTTTGAATTGCAGTTAAGGGCGCTTGAGGGAAGACAAAGAGTATTCAAAGGGATCCTCGTTTGTACAAGATCCTCATCTGTATCAGATCCTCATGCACCAGCATATAATAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00312	31308	35612	+

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000312s00021991.1	PF02536.9	mTERF	141	299	3.30E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.412
SRR1783600	control	15.641
SRR1783602	moderate drought stress	19.468
SRR1811619	moderate drought stress	19.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.779
DRR006520	Root Summer glycyrrhizin high producing strain	19.592
DRR006521	Root Winter glycyrrhizin high producing strain	4.709
DRR006522	Root Winter glycyrrhizin high producing strain	4.258
DRR006523	Root Summer glycyrrhizin low producing strain	11.364
DRR006524	Root Summer glycyrrhizin low producing strain	10.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.005
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.659
SRR2868004	Drought Stress (root)	5.911
SRR2967015	Control (root)	6.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.855
SRR9715740	Leaf	5.087
SRR9715741	Leaf	3.338
SRR9715739	Root	7.266
SRR9715742	Root	4.616
SRR9715743	Root	5.816

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.962
SRR8749028	MeJA induced 9h	4.881
SRR8749029	MeJA induced 9h	4.905
SRR8749030	Uninduced	2.642
SRR8749031	Uninduced	2.111
SRR8749032	Uninduced	2.588

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.105
SRR8400027	Control - Root	9.188