Gene detail information of Glyur000312s00021983 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03090.1 | 6.00E-105 | expansin A15 |
| NR | AFK34543.1 | 4.88E-166 | unknown [Medicago truncatula] |
| Swissprot | tr|O80622|EXP15_ARATH | 5.00E-153 | Expansin-A15 (Precursor) |
| trEMBL | tr|I3S2Q1|I3S2Q1_MEDTR | 2.00E-166 | Uncharacterized protein {ECO:0000313|EMBL:AFK34543.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00312 | 6819 | 9151 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000312s00021983.1 | PF03330.13 | DPBB_1 | 60 | 145 | 1.90E-24 |
| Glyur000312s00021983.1 | PF01357.16 | Pollen_allerg_1 | 156 | 233 | 1.50E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 876.069 |
| SRR1783600 | control | 879.433 |
| SRR1783602 | moderate drought stress | 131.510 |
| SRR1811619 | moderate drought stress | 130.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 420.880 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 416.146 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.070 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.069 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 148.166 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 148.238 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 261.601 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 260.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 122.089 |
| SRR2868004 | Drought Stress (root) | 21.968 |
| SRR2967015 | Control (root) | 38.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.584 |
| SRR9715740 | Leaf | 22.144 |
| SRR9715741 | Leaf | 49.115 |
| SRR9715739 | Root | 140.392 |
| SRR9715742 | Root | 75.405 |
| SRR9715743 | Root | 84.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.088 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.038 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 663.147 |
| SRR8400027 | Control - Root | 682.821 |