Gene detail information of Glyur000311s00024712 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66480.1 | 3.00E-39 | plastid movement impaired 2 |
| NR | XP_006602004.1 | 5.19E-99 | PREDICTED: uncharacterized protein At1g66480-like [Glycine max] |
| Swissprot | tr|Q6NLC8|Y1648_ARATH | 9.00E-55 | Uncharacterized protein At1g66480 |
| trEMBL | tr|I1MZD0|I1MZD0_SOYBN | 2.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00311 | 30547 | 36518 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000311s00024712.1 | PF14009.1 | DUF4228 | 1 | 166 | 1.40E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.462 |
| SRR1783600 | control | 11.106 |
| SRR1783602 | moderate drought stress | 5.248 |
| SRR1811619 | moderate drought stress | 5.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.571 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.928 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.373 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.727 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.484 |
| SRR2868004 | Drought Stress (root) | 11.322 |
| SRR2967015 | Control (root) | 8.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.247 |
| SRR9715740 | Leaf | 4.382 |
| SRR9715741 | Leaf | 4.049 |
| SRR9715739 | Root | 1.800 |
| SRR9715742 | Root | 6.122 |
| SRR9715743 | Root | 6.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.539 |
| SRR8749028 | MeJA induced 9h | 48.689 |
| SRR8749029 | MeJA induced 9h | 59.823 |
| SRR8749030 | Uninduced | 5.888 |
| SRR8749031 | Uninduced | 8.118 |
| SRR8749032 | Uninduced | 24.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.986 |
| SRR8400027 | Control - Root | 10.979 |