Gene detail

Gene detail information of Glyur000310s00013631

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17120.1	0	cationic amino acid transporter 8
NR	XP_004497371.1	0	PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cicer arietinum]
COG	NP_622386.1	1.00E-72	amino acid transporter [Thermoanaerobacter tengcongensis MB4]
Swissprot	tr\|Q9SHH0\|CAAT8_ARATH	0	Cationic amino acid transporter 8, vacuolar
trEMBL	tr\|I1KZY5\|I1KZY5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G01230.1}

Sequence

Transcript Sequence

>Glyur000310s00013631.1
ATGGAACCACCAGCGTCCTCCTCCGCCGCCATCACCGCCACTTCGAAGACGCGAACCTACTGTCGGTGGAGCAAGCAAGACTTCTTCCCGGAGCCGTCGTTCCAATCGGGGAAATCCTACCGTAACGCGGTGGCGAACACGTGCCCTCGCCTGAAGGATCGACTCCTGAACCGCTCCACCGACTCGCACGAGCTCCTCGTTCTCCCCAAGGCCAGCGAGAATCGCATGACTCGCTGCCTCACCTGGTGGGACCTCATCTGGCTCGCCTTCGGCTCCGTCGTCGGCTCCGGCATCTTCGTCGTCACCGGCCAGGAAGCACGCCTCACCGCCGGTCCCTCCATCGTCCTCTCCTACGCCGCCTCCGGCTTCTCCGCCCTCCTCTCCGCCCTCTGCTACACCGAGTTCGCCGTCGATGTCCCAGTCGCCGGCGGCTCCTTCTCATTCCTCCGAATCGAGCTCGGCGACTTCCTCGCCTTCATCGCCGCCGGCAACATTCTCCTCGAGGCACTCGTCGGCGCCGCGGGACTCGGCCGCTCATGGTCCTCCTACTTCGCCACCATGGTGAAAAACGACCCGGACTCATTCCGGATCCGGGTCAAATCCCTAAAAACCGGCTTCAACCTCCTCGATCCCGTCGCCGTTACCGTTCTCCTAATCACCAACGGCATCGCCGTTACCGGAACCAAAAAAACCTCCGTCTTAACCTATCTCAGCTCCGTTATCACCACACTAATCTTCGCCTTCATCATAATAACCGGCTTCGTTAACGGAAAGTCCTCAAACCTAACGCCGTTTTTCCCTTACGGCGCTAAGGGCGTTTTCAACGCCGCTGCCGTTGTGTATTGGTCGTACACGGGTTTCGACATGGTTGCAACGATGGCTGAAGAGACCAAAAACCCTTCTAGAGACATACCTATTGGCTTGATTGGTTCAATGACGATGATAACCGCCGTTTATTGTTTAATGGCTATGGCGCTTGTTACGATGGTTAAGTACACGGAGATTGACCCTGACGCCGCTTACTCCGTTGCCTTTGTCCAAATCGGAATGGATTGGGCCAAGTACCTTGTTAGTGTTTGCGCTTTGAAGGGAATGACCACGAGTTTGCTCGTTGGGTCCATGGGCCAGGCCCGTTACACAACCCAGATCGCAAGGTCACATATGATTCCACCCTTCTTCGCACTCGTTCACCCCAAAACTGGAACACCGGTCAACGCCACCCTGTTGACCACTCTCTGCAGTTCAGTCATTGCTCTTTTCACTAGCCTTGATGTTCTGTCCAGTGTTTTTTCCGTTAGCACGCTCTTCATTTTCATGCTCATGGCCGTTGCGTTGCTCGTGAGGAGGTATCACGTGAGGGGGGAGGAGGCAACTCATAAGAGTGGTGATCATCACGTGAGGTGGCTTGTGTTGTGCTTGTTTGTTATTGTTGGTTCCTCTGCGGTGGGGTCTGCACTTTGGAACTCGGGGAAGCTGGGTTGGGTTGGGTACACGGTGGCTGGTTTGGTTTGGTTTTTGGCCACGTTGGGGATGAGTTTCCTACCGAAGCAGAGGACTCCCAAGGTTTGGGGTGTTCCATTGGTTCCGTGGCTGCCTTCGTTGTCCGTTGCCACCAATGTTTTCCTCATGGGGTCGTTAGGCTCTGAGGCTTTCTCTAGGTTTTTGATTTGCACTGCTGTCATGTTTGTGTATTATTTGTTTGTTGGTGTCCATGCTACTTATGACGTGGACCATCAAAATGATCAAGAATCAAAGCATGGTGGGGGAATGGAAGATGGTACCAATCTAGGGGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00310	199821	201617	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000310s00013631.1	PF13520.1	AA_permease_2	80	513	7.20E-50
Glyur000310s00013631.1	PF13906.1	AA_permease_C	523	572	3.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.610
SRR1783600	control	16.425
SRR1783602	moderate drought stress	19.357
SRR1811619	moderate drought stress	19.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.968
DRR006520	Root Summer glycyrrhizin high producing strain	21.159
DRR006521	Root Winter glycyrrhizin high producing strain	1.718
DRR006522	Root Winter glycyrrhizin high producing strain	1.736
DRR006523	Root Summer glycyrrhizin low producing strain	9.089
DRR006524	Root Summer glycyrrhizin low producing strain	8.600
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.601

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.517
SRR2868004	Drought Stress (root)	22.871
SRR2967015	Control (root)	16.628

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.018
SRR9715740	Leaf	11.491
SRR9715741	Leaf	12.666
SRR9715739	Root	15.059
SRR9715742	Root	15.286
SRR9715743	Root	15.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.303
SRR8749028	MeJA induced 9h	2.508
SRR8749029	MeJA induced 9h	1.318
SRR8749030	Uninduced	1.691
SRR8749031	Uninduced	0.529
SRR8749032	Uninduced	1.913

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.103
SRR8400027	Control - Root	22.602