Gene detail

Gene detail information of Glyur000310s00013630.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78440.1	6.00E-103	Arabidopsis thaliana gibberellin 2-oxidase 1
NR	KEH19494.1	6.32E-180	plant gibberellin 2-oxidase [Medicago truncatula]
COG	YP_007565700.1	3.00E-20	putative oxidoreductase [Ilumatobacter coccineus YM16-304]
Swissprot	tr\|Q9SQ80\|G2OX1_PEA	6.00E-164	Gibberellin 2-beta-dioxygenase 1
trEMBL	tr\|A0A072TPR3\|A0A072TPR3_MEDTR	2.00E-180	Plant gibberellin 2-oxidase {ECO:0000313\|EMBL:KEH19494.1}

Sequence

Transcript Sequence

>Glyur000310s00013630.1
CTCAGAACTCAAAAGCCTTATCAACTCTATTTCCTCTTTCACTCATTTACTCTCCCAAAACTCTTCAAACATCTTATTCTTGTTTCTCTTTCACTCAGACAACACACTCACTCATTCACAATGGTGGTGTTATCCAAACCAACAACAACAGAGCAGTATCCTTGTATTAGGAACTGTAAAACAACCACATTCTCCACAGAAACTACTATACCTTTGGTGGACCTCTCCAAACCCGATGCAAAGACCCTCATAGTGAAGGCTTGTGAGGAGTTTGGATTCTTCAAGGTAACCAACCATGGTGTCCCCATGGAATCAATCTCCTTGTTGGAGTCTGAAACCATAGATTTCTTCTCCATGCCCCTCAACCAGAAAGAGAAAGCTGGTCCAGCTGAACCATTTGGGTATGGGAACAAGAAGATTGGAAGAAACGGTGATGTGGGTTGGGTTGAATATCTTCTTCTCACAAGCAACCAAGACTACAACACCATTAGACTCTCCCCTGCTCTTGGGAATGACCCAGATAAGTTTCGGTGTGTGTTGAGTGATTATATGTCAGCTGTGAAGAAGATGGCTTGTGAGATTCTTGAGTTGATGGCTGAGGGGTTGAACATTCAGGAGAAGGATGTGTTCAGCAAGCTTCTGATGGACAAGGAGAGTGATTGTATGTTCAGGATCAACCATTACCCTCCTTGCCCTGACATGATCATGGGTACTACTTTGAATAACAACAACAATAAGAATAAGAATGGTGGTGAAAGCGTGGTTGGGTTTGGTGAACACACTGATCCACAGATAATTTCCCTGTTGAGGTCCAACAACACTCGTGGCTTCGAAATTTGTCTGAGGGATGGGAGTTGGATTTCAGTGCCACCTGATCACAATTCCTTCTTCGTGATGACGAATGGACGGTTCAGGAGTGTGAGGCACAGGGTGTTTGCAAATGGGTTCAAGTCGAGGCTGTCGATGATCTATTTCGGTGGTCCACCCCTGAGTNAGAAAATAGCACCATTGCCTTGTCTTCTCATCAAAGGAAAGGAAAGCAGCCTCTACAGAGAGTTTACATGGCTTGAGTACAAGAATTCAGCTTATGCTTCAAGGCTCTCTGACAATAGGCTTGGCCACTTTGAGAGAATTAATGCTGCCGCATAACATTAATGCAAATATGTGTTACGGGCATGCACTTGTGTCAATATTGGGATTTCAATTTCAATATATAATAATATACTAGTACTAGATGTGGGTTTTCCTTTTCTTTTGTTGTGGGATTTTAGTTTTAATATGTAATACAAGGTTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00310	188291	190837	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04125	E1.14.11.13	EC:1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000310s00013630.1	PF14226.1	DIOX_N	30	117	1.50E-15
Glyur000310s00013630.1	PF03171.15	2OG-FeII_Oxy	180	286	3.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.480
SRR1783600	control	55.854
SRR1783602	moderate drought stress	30.221
SRR1811619	moderate drought stress	29.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.248
DRR006520	Root Summer glycyrrhizin high producing strain	0.331
DRR006521	Root Winter glycyrrhizin high producing strain	6.061
DRR006522	Root Winter glycyrrhizin high producing strain	6.161
DRR006523	Root Summer glycyrrhizin low producing strain	0.084
DRR006524	Root Summer glycyrrhizin low producing strain	0.084
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.135

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.233
SRR2868004	Drought Stress (root)	4.703
SRR2967015	Control (root)	13.213

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.285
SRR9715740	Leaf	1.067
SRR9715741	Leaf	4.841
SRR9715739	Root	153.508
SRR9715742	Root	34.418
SRR9715743	Root	50.504

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.412
SRR8749028	MeJA induced 9h	0.932
SRR8749029	MeJA induced 9h	0.200
SRR8749030	Uninduced	3.639
SRR8749031	Uninduced	1.275
SRR8749032	Uninduced	4.654

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.876
SRR8400027	Control - Root	44.686