Gene detail

Gene detail information of Glyur000310s00013620

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14600.1	1.00E-113	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_007133354.1	0	hypothetical protein PHAVU_011G172200g [Phaseolus vulgaris]
COG	YP_006773547.1	1.00E-44	tRNA methyltransferase complex GCD14 subunit [Candidatus Nitrosopumilus koreensis AR1]
trEMBL	tr\|V7AKG9\|V7AKG9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05348.1}

Sequence

Transcript Sequence

>Glyur000310s00013620.1
TTTACGTCGTCTTCCCAGTGAAGTGCTACTTCACAGTGTAGTGTAGGGTCGAAACGTTACCCTAAATTTGGAGACCCAATTTCCCAAATTTGAAGAGAAAAGCCAACACCTTCCTCACCATCAGAGAGGGTACTGGACAGGAAAAACATTTGTACCCGGAATCAGAAAAAGATACTTGTTCTTTTTTATTGGACTGAGAGAGATTTGAAGACTTAGAAGATGTTGGCCAGTGATCCTACAAAGAAGATATCGTTTAATCGCTCTATTTGTAATGGTGATTTGGTTATTGTTTACGAAAGGCATGACAACATGAAGGCTGTAACAGTGTCCGAGGNATCAGTCCTGCAGAATCGATTTGGTGTTTTTAAACATTCAGACTGGATAGGAAAGCCATTTGGGTCCAAAGTATTCAGCAATAAGGGTGGTTTTGTGTACTTGTTNGCTCCGACACCAGAATTATGGACCTTAGTTTTAAGCCACAGGACTCAGATTCTATATATTGCAGATATTAGCTTTGTTGTCACNTACCTGGAGATTGTTCCCGGTTGCTTGGTTCTTGAATCTGGAACTGGAAGTGGATCCTTAACTACTTCACTTGCAAGGGCAGTAGCTCCTACAGGACATATTTATACATTTGATTTCCATGAGGAAAGGGCCAGATCAGCTAGGGATGATTTTGANAGGACTGGTCTAAGCAGCTTAGTCAGTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGATGAATTTGCTGGCTTGGCTGATGCAGCCTTTTTGGATCTACCACAGCCTTGGCTAGCTNTTCCTTCAGCTGCAAAAATGTTAAAACAAGACGGCACATTATGCTCATTCTCCCCTTGTATTGAACAAGTACAACGATCATGTGAAACGCTTCGAACCAGCTTCACTGATATAAGGACTTTTGAGGTTCTCCTACGCACATACGAAGTTCGAGAAGGGAAAATGGAAAGCTTACCGGGGAACGAGAATGGCTCTAATGGTTCACTTCCTTGCAAGAGGAGGCAGTGTTCAGATGGAGGCAATGTACCCAGCAGTCCTATTTCTTCTGTTATGGCTAGACCATGTGGTGAAGCTAGAGGTCACACAGGCTATGAATGGGCAGAGGATGATGAAGACCTTTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00310	137997	141458	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030488 tRNA methylation

cellular_component
GO:0031515 tRNA (m1A) methyltransferase complex

molecular_function
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000310s00013620.1	PF08704.5	GCD14	69	299	2.20E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.236
SRR1783600	control	9.017
SRR1783602	moderate drought stress	8.905
SRR1811619	moderate drought stress	9.172

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.585
DRR006520	Root Summer glycyrrhizin high producing strain	19.950
DRR006521	Root Winter glycyrrhizin high producing strain	11.922
DRR006522	Root Winter glycyrrhizin high producing strain	11.977
DRR006523	Root Summer glycyrrhizin low producing strain	20.964
DRR006524	Root Summer glycyrrhizin low producing strain	20.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.828
SRR2868004	Drought Stress (root)	11.243
SRR2967015	Control (root)	12.368

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.082
SRR9715740	Leaf	9.241
SRR9715741	Leaf	6.865
SRR9715739	Root	6.419
SRR9715742	Root	13.360
SRR9715743	Root	10.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.548
SRR8749028	MeJA induced 9h	5.509
SRR8749029	MeJA induced 9h	4.375
SRR8749030	Uninduced	1.125
SRR8749031	Uninduced	0.301
SRR8749032	Uninduced	0.639

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.417
SRR8400027	Control - Root	13.482