Gene detail information of Glyur000310s00013616 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07615.1 | 4.00E-133 | GTP-binding protein Obg/CgtA |
| NR | XP_004495251.1 | 0 | PREDICTED: GTPase obg-like [Cicer arietinum] |
| COG | YP_001877346.1 | 3.00E-48 | GTP-binding protein Obg/CgtA [Akkermansia muciniphila ATCC BAA-835] |
| Swissprot | tr|F4HSD4|OBGM_ARATH | 4.00E-175 | Probable GTP-binding protein OBGM, mitochondrial (Precursor) |
| trEMBL | tr|K7K3X8|K7K3X8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G35083.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00310 | 94699 | 96840 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000310s00013616.1 | PF01018.17 | GTP1_OBG | 49 | 140 | 4.50E-23 |
| Glyur000310s00013616.1 | PF01926.18 | MMR_HSR1 | 325 | 451 | 5.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.368 |
| SRR1783600 | control | 4.373 |
| SRR1783602 | moderate drought stress | 3.148 |
| SRR1811619 | moderate drought stress | 3.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.788 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.445 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.183 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.496 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.953 |
| SRR2868004 | Drought Stress (root) | 4.491 |
| SRR2967015 | Control (root) | 3.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.548 |
| SRR9715740 | Leaf | 2.609 |
| SRR9715741 | Leaf | 1.358 |
| SRR9715739 | Root | 0.699 |
| SRR9715742 | Root | 3.565 |
| SRR9715743 | Root | 2.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.432 |
| SRR8749028 | MeJA induced 9h | 3.533 |
| SRR8749029 | MeJA induced 9h | 3.293 |
| SRR8749030 | Uninduced | 1.202 |
| SRR8749031 | Uninduced | 0.274 |
| SRR8749032 | Uninduced | 0.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.777 |
| SRR8400027 | Control - Root | 8.362 |