Gene detail

Gene detail information of Glyur000310s00013613.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12890.1	2.00E-23	activator of spomin::LUC2
NR	XP_006598211.1	1.09E-82	PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [Glycine max]
Swissprot	tr\|Q9LKL2\|APRR1_ARATH	5.00E-12	Two-component response regulator-like APRR1
trEMBL	tr\|K7MDZ5\|K7MDZ5_SOYBN	4.00E-83	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G41030.2}

Sequence

Transcript Sequence

>Glyur000310s00013613.1
GTTCACCCATAAAGTAAAAGCCTAGAGAGATAACATAAAAAATTAAGTTCACATATCTTAGTTTTTATTGTTTATCCAAATTCCCTAGCTATATTTTATTTTGGCCACTTGCCTCAATCCCCAACTGCACTATATATTCAATTTCAAGCCTCAAACCAATTATAAATAAACACTCACATAAACACATCTACACCCTAAATTCCTACAGCCATTTTCCATGCCNCTCTCCTTTCTCTATAATGGCCTTTAATATTCCTCAATTCTATTCAAACTACATGANATACCCTGTTGATCTCACAGCAGAGTTCCCCACTCCAGCAGGAGTGGCTGCAGTATATGGCAATAATACCTCAGTTATGGACAACACAATATTGTGGGGTCAAGATAACAACAACAACAACAACAACAACTTCACTACTCCTGTGCATGATAATGATAATGGAGCACTACTACTTGATCATAATAATAATAATGTGTCTCGGGATAATTGGGAGAGTACCATCTCTAAGGCTTGGATGTCAACTTTCTCAGAGCAGCTAGGGAGTGTTCCAGAATGCAAAATGGGCTTCTATGGTGGTGCGTTTCAGAATCCAAGAGGGGGATACCAACCTCAAATTGGTGAGTTTGAGGAAGATACTGCCACACAAAACTGGCAGCTGGGAGTTCAAGGGAATTATCAAATGCCAGCTGGGGAAGAACCTAATATAAAGGTAGAAAGATACTCAGAAGAAGAAAGGAAGGAAAGAATTCTGCGATATTTGAAGAAAAGAAATCAAAGGAACTTTAACAAAACCATCAAGTATGCATGTCGGAAAACCTTGGCTGATCGGCGAGTCAGAGTCAGGGGAAGGTTTGCAAGAAACAATGAGCTATCTGAGGAAGACATATTGGCAAGGGAACAGAATAATCACAATGAGAACTTTATTTATGGTGGTGATAATTCAGTCCAATTCCAGGTAAAGGATGATGATGAGGATGATGATTGGCTGCAAAAGGCCATGNCAAGTTTGGTCTATCTATCTCATTCTTCCCCGGATGATATATAGGTTAATTAATAGTAGTTTGATTGAACATGTGTACGTGGTATAGTCTTGTTAAAGCAGATGTATGTGACTCTTCATCAGGCTGGATTTAGATTTATTGTAGGACTTAATAGGAAACTTGTTCAGCATATATAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00310	80906	82785	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000310s00013613.1	PF06203.9	CCT	166	210	2.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.070
SRR1783600	control	1.130
SRR1783602	moderate drought stress	0.570
SRR1811619	moderate drought stress	0.583

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.907
DRR006520	Root Summer glycyrrhizin high producing strain	9.909
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.406
DRR006524	Root Summer glycyrrhizin low producing strain	5.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.472
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.218
SRR2868004	Drought Stress (root)	0.419
SRR2967015	Control (root)	0.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.487
SRR9715740	Leaf	0.347
SRR9715741	Leaf	0.000
SRR9715739	Root	0.228
SRR9715742	Root	2.821
SRR9715743	Root	3.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.051
SRR8749030	Uninduced	0.015
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.464
SRR8400027	Control - Root	4.792