Gene detail information of Glyur000310s00013605 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79120.1 | 4.00E-132 | Ubiquitin carboxyl-terminal hydrolase family protein |
| NR | XP_004516024.1 | 0 | PREDICTED: uncharacterized protein LOC101511425 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q689D6|RPD1_ARATH | 8.00E-39 | Protein ROOT PRIMORDIUM DEFECTIVE 1 |
| trEMBL | tr|I1KHA8|I1KHA8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G04220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00310 | 48758 | 52117 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000310s00013605.1 | PF11955.3 | PORR | 39 | 375 | 5.00E-101 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.315 |
| SRR1783600 | control | 18.946 |
| SRR1783602 | moderate drought stress | 29.867 |
| SRR1811619 | moderate drought stress | 29.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.738 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.864 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.975 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.779 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.942 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.601 |
| SRR2868004 | Drought Stress (root) | 9.326 |
| SRR2967015 | Control (root) | 9.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.306 |
| SRR9715740 | Leaf | 11.551 |
| SRR9715741 | Leaf | 10.516 |
| SRR9715739 | Root | 5.749 |
| SRR9715742 | Root | 15.861 |
| SRR9715743 | Root | 12.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.779 |
| SRR8749028 | MeJA induced 9h | 3.787 |
| SRR8749029 | MeJA induced 9h | 1.958 |
| SRR8749030 | Uninduced | 1.055 |
| SRR8749031 | Uninduced | 0.194 |
| SRR8749032 | Uninduced | 0.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.808 |
| SRR8400027 | Control - Root | 45.095 |