Gene detail

Gene detail information of Glyur000310s00013604

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12920.1	2.00E-50	SBP (S-ribonuclease binding protein) family protein
NR	XP_004499409.1	6.46E-144	PREDICTED: uncharacterized protein LOC101513168 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	1.00E-85	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|V7AIF0\|V7AIF0_PHAVU	1.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESW05377.1}

Sequence

Transcript Sequence

>Glyur000310s00013604.1
ATAAAGTGTGGAGTGATGATAAGATATGAACCAAACCCTGAAAATAAACCCCACCATACAGCCTTGATGCCACCTCGATTGCATGCTTTTGTTCTCTGACGCCCCCATATACTCCATTCATTCATTCCTTCCCTTCACTTCATATCTCCCTTCTCTTCTCCGTTTTCCAAAACCAAAACCTTCACCACACAAAACAAAGACTCTTAACATACATAATTAACAGAAGCAGCTAGCAGCTATCGCAGCNACAACAACGCAAACATGGCTGTTGAGGCTCGCCATCTCAACTTTTTCCATCCTCAGCTACTCACACCGAACCGAGAAATCGTGACGAACCCCATCGACACAAGCATCATAAACATGTACAACACCTACGCCGGCAACTACTCCTCCATGCTGCCGCTATCCGGGACCACCACCGCGTCGGAGAATCTCATCCCGGCGGCGCCGTACAATCCCATCGTACCCGACACTCTCCATCATCAGAAAACCACCGCCATGAAATCCGACAGCACCCTCACTCACAACAACAACAACAACGTTCCGNTCTCACGAAAACGGTCGAGGGAAACAATCAACAATAACTACGACCCTTTCCCTTCTCACAAAAACTGTGGCACTCTCTCATTCCTCGGCCATGACATTTCACAACACATCCACCACNACCATCTCGACATCGATAACCTCATTTCCCAACACATGGAGAAGGTGAGGGTGGAATTGGAAGAGAAGAGGAAGAGGGAAGCGAGGAGGTTGATCGAGGCAATAGAGGTTGGGGTAATGAAGAGATTGAAAGCGAAGGAGGAANAGATCGAGAAGATTGAGCGAATGAACATGGCTCTCGAAGAGCGCGTGAAGTCGCTGTGCATCGAGAATCAGATATGGAGAGACCTGGCGCAAACTAACGAGGCCACCGCCAATGCCCTCCGCACCAACCTCGACCACGTCCTCAACCGTCTCAGGGACGACGGAGAATACGCCGCCACCGTCGCGCCAGCGGAGGAGGAGGACGCCGAGTCATGCTGCGGCAGCAACGATTACGACGGCTGGCGCACGGTAGAACGGGGTGCGCAGGATAAGGAGGATAGGAGGTTGAGGTTGTGCAGGAACTGNGGGAAGGAAGAATCGTGTGTCCTAATCTTGCCCTGTAGGCACCTCTGCCTCTGTACTCTCTGTGGGTCTACATTGCACACTTGTCCTGTTTGTAAATCCTTCAAAAATGCCAGCGTTCATGTTAACATGAGCTAATTAATTAATCCACTCAGAGGAAAATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00310	31086	32554	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0016567 protein ubiquitination

GO:0031347 regulation of defense response

cellular_component
GO:0005634 nucleus

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000310s00013604.1	PF13920.1	zf-C3HC4_3	280	318	1.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.506
SRR1783600	control	31.876
SRR1783602	moderate drought stress	26.870
SRR1811619	moderate drought stress	27.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.147
DRR006520	Root Summer glycyrrhizin high producing strain	41.141
DRR006521	Root Winter glycyrrhizin high producing strain	58.060
DRR006522	Root Winter glycyrrhizin high producing strain	56.848
DRR006523	Root Summer glycyrrhizin low producing strain	24.276
DRR006524	Root Summer glycyrrhizin low producing strain	24.573
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.833

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.250
SRR2868004	Drought Stress (root)	64.350
SRR2967015	Control (root)	80.068

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.294
SRR9715740	Leaf	3.960
SRR9715741	Leaf	3.931
SRR9715739	Root	6.578
SRR9715742	Root	7.695
SRR9715743	Root	8.479

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.128
SRR8749028	MeJA induced 9h	18.836
SRR8749029	MeJA induced 9h	21.230
SRR8749030	Uninduced	2.598
SRR8749031	Uninduced	1.247
SRR8749032	Uninduced	2.624

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.958
SRR8400027	Control - Root	66.786