Gene detail

Gene detail information of Glyur000310s00013601

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G56050.1	1.00E-169	GTP-binding protein-related
NR	XP_004517017.1	0	PREDICTED: ribosome-binding ATPase YchF-like [Cicer arietinum]
COG	YP_007126400.1	3.00E-177	GTP-binding protein YchF [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q0D3S3\|OBGC1_ORYSJ	1.00E-12	Probable GTP-binding protein OBGC1, chloroplastic (Precursor)
trEMBL	tr\|I3SBQ5\|I3SBQ5_LOTJA	0	Obg-like ATPase 1 {ECO:0000256\|HAMAP-Rule:MF_03167}

Sequence

Transcript Sequence

>Glyur000310s00013601.1
AGTAGATGTTACCAAAAAAAAAAACCACCAAAGTAGCTCATCACTCGCTCCTGAGACAATGGTTGAAAGTTGAAACCTAATCAGAAACGGCGGGCATAGAATAGACGCGTGCAGTGCACCACATCATAAAATGTGTGGGGCTGTAGTAGTAGTAGTAGTAGTGCAGGAGGAGAAGAGATAACAACAAACACACACACACACACACACACACGCTCCTTAGTCCTCCCCTTGTGGGTCTCTTCTCTGTGTTCTGTTCTGTTCCTAATGGCTAGAGCAGCGCTGGTTCCCAGTTTAGTTCATCCATTGAAGTCAACCCTTTTCAGAAGAAACCACACTCTTCTCACCCCTCACCTTTATGGGGCTCAGGTTCTGCCAAGGCTTTCCTTTTCTTCTTCTTCTTCTTCTTCGTCCAAGATAAGCATGAGCCTCAGGGCTGGCATCGTTGGCCTCCCCAATGTTGGCAAGTCCACCCTCTTCAATGCCGTTGTTGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCTTTTTGTACGATAGAGCCAAATGTGGGGATTGTTGCTGTTCCCGATTCTCGTCTCCATGTGCTCTCTGATCTCAGTAAATCTCAACGAGTGGTTCCGGCATCCATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGCTAGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCCATACTTCAGGTTGTACGATGTTTTGAGGACAATGACATTATTCATGTCAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAACTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAGAAAAGACTGGATAAACTAAAAAAAGGCAAGGCAAAGGATTCACAATCTAAACTCAAGGAAGAGGCAGAGAAGTCTGCATTGGAAAAGATTCGCGAGGCACTCATGGATGGAAAACCTGCACGATCTGTGACCTTAACAGATTTTGAAAGGGATGCTGTCAAGCATCTCTGCTTGCTCACCATGAAACCAATCATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAGCAATAATTATGTCAAGGACGTCAAGAATGTTGCATCTGAGTTGCAGTCTGGAATTGTTACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACTAATTGAAGAAAGACAAGAATATTTGAAATCTCTTGGCGTTNGTGAAAGTGGTCTTGGGAACCTAATTAGGGCAACCTATGAACTTTTGGGGCTGCGAACTTATTTTACTTCTGGCGAGAAGGAGACAAAAGCATGGACAATACTTGCAGGAATGACTGCGCCTCAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATCCGAGCAGAGACAGTGTCTTATGATGACTTTGTTGCTGCTGGTTCACTTGCTGCAGCACGAGAAAAAGGACTTTTGAGATCTGAAGGGAAAGACTACATTGTACAAGAAGGAGATGTAATGTTGTTTCGATTCAATGTATAGCAGAACTTAGCTGCTCCCAGTAGAGAAGTTGAGATATATAATTTATATGAGCAAAGATCAGGAATTTTTTTCAGCCCATTGCTGGTTATAGTTTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00310	9483	16564	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000310s00013601.1	PF01926.18	MMR_HSR1	57	162	1.40E-18
Glyur000310s00013601.1	PF06071.8	YchF-GTPase_C	338	421	6.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.075
SRR1783600	control	1.987
SRR1783602	moderate drought stress	1.612
SRR1811619	moderate drought stress	1.581

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.127
DRR006520	Root Summer glycyrrhizin high producing strain	7.072
DRR006521	Root Winter glycyrrhizin high producing strain	4.356
DRR006522	Root Winter glycyrrhizin high producing strain	4.113
DRR006523	Root Summer glycyrrhizin low producing strain	4.539
DRR006524	Root Summer glycyrrhizin low producing strain	4.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.129
SRR2868004	Drought Stress (root)	7.437
SRR2967015	Control (root)	6.754

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.138
SRR9715740	Leaf	41.575
SRR9715741	Leaf	33.610
SRR9715739	Root	0.980
SRR9715742	Root	4.919
SRR9715743	Root	4.568

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.083
SRR8749028	MeJA induced 9h	16.153
SRR8749029	MeJA induced 9h	12.692
SRR8749030	Uninduced	4.174
SRR8749031	Uninduced	1.158
SRR8749032	Uninduced	1.794

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.577
SRR8400027	Control - Root	14.168