Gene detail

Gene detail information of Glyur000309s00018429

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55910.1	5.00E-98	zinc transporter 11 precursor
NR	XP_003532170.1	0	PREDICTED: zinc transporter 2-like [Glycine max]
COG	YP_001423891.1	1.00E-12	ZIP family zinc transporter [Coxiella burnetii Dugway 5J108-111]
Swissprot	tr\|Q852F6\|ZIP2_ORYSJ	2.00E-133	Zinc transporter 2 (Precursor)
trEMBL	tr\|I1KYI4\|I1KYI4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G44010.1}

Sequence

Transcript Sequence

>Glyur000309s00018429.1
ACTTTAGCTCCTCATTGCGTGTTAACAAACACGCACTAAAGCATCCAACTGAACGTGCGGTAACAAGTTATGCAGTACACACGCTTTCTGTCTCCAATTGGGTTGGAACCTCCCAACGCCCTCTAACAGTCCAACGTAGTACNCTCTATCTGTGTCGTACAAAGTTACAAACCATTCTCCAACTCCGAAGACCAATACATTGACTCACATCACATGATTTAGATTCGTCCATTTTAAAAACTAATATTCTTCATTCATCCCAATTCCATTTTTGTCTTTTTCTTTACTCCATCTCCTTCCCAATGTCTCGCTCTCCTCGCTTCACCTTCACCTTCTTCTTNTTCTTCTCTNNNATCCTTCTTCTCTTCTTCCTCTCTGTTTCAGCTCACAGTGGCCACCACGACGACGATGACGGCGATGCCGACGCCGACTCTTCCGGCGGCNACGATGCTCCGGACCTCCGTGCGAGACCCTTGGTCCTTGCGAAGGTTTGGTGTCTGATTGTGATGTTTGTGGCTACTTTTGTAGCTGGGGTATCGCCTTACGTGTTGAAATGGAACGAGGGGTTCTTGGTATTGGGGACACAGTTTGCTGGGGGNGTGTTTCTGGGAACTGCCATGATGCATTTTCTAAGTGATGCCAACGAGACGTTTGGGGATTTGACTGAGAAAGAGTACCCTTTTGCCTTCATGTTGGCCTGTGCTGGTTATTCCATCACCATGCTCGCCGATTGTGTNATTTCCTCCATTGTCGGGAACAAGCCTCGCGATCGAGCTGATGTTGAGGGTCAAGTTGCAGGAGCTGAGACGGGTAAAGGAAGGGGCAATGGTGTTACTTCTCAGTCACAATACCAGGCTTCTGCTGGCACTGATCACCACTTAGCCAACCCTGCTCTTGCATCTGTGAGTTCACTTGGAGATACTACCATCTTGTTGATAGTTGCCCTTTGTGCTCATTCTGTGTTTGAGGGTTTAGCAATTGGAGTTGCTGAGACAAAAGCAGATGCTTGGAAAGCGTTATGGACAATCTGTTTGCACAAGATATTTGCAGCAATTGCCATGGGTATTGCCCTCCTCAGGATGATTCCTAATAGGCCCTTAGTATCATGTGCAGCCTATTCCTTTGCCTTTGCCATCTCAAGTCCAATTGGTGTGGCCATTGGAATCATATTAGATGCCACAACACAAGGTCCTGTGGCGGATTGGATCTTTGCTATATCAATGGGTCTAGCTTGTGGGGTGTTTATCTATGTGTCAATAAACCATCTTTTGGCAAAAGGGTATGTGCCCCACACACCAACAAAGGTTGACTCTGCCTATTCGAAGTTCCTTGCNTTGCTGTTGGGTATCGTAGTGATAGCGGTTGTGATGATCTGGGATACCTAAGATGCTTCATAAGCAAGAGCCATAATAATATTAGCGGCTTGGTTCTACGATAACTTCTCTTTACAGCCTACACAAAATATTGTTTTACAAGGGTGATGGTTCAATGTTGTTCACTTTTGTACTTAATCATTAGAAATAGAGTGGACACTGTCAAAAGAAAAATGAAAAAAGAAGCCACGATGCAAAGTATGTTTCATAGCGTGGTATTGCCTCCTTTCAATTTAGGCAATAACCAATTACCTATATTTGGAAACAGTAATGAAGAGGTAGCTAGATGCAGTTTACAAGTTTCAATTCTCCTTTTGCCTTTACATTATTATTATCCATGAGCAACTCCTTATTATGTGCCATGTGTTTTTCTTCTATGTGGTCCATTTAGGCATTGGGGGTGGTCATGGTTTGAAATGGAAATGCTCACGCAGTCTAACTCTGTGAACATTTACATATGACTAATGGTTGGAAACTTGGAATTGTGAACTGCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00309	128363	130929	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000309s00018429.1	PF02535.17	Zip	60	355	1.20E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.876
SRR1783600	control	3.844
SRR1783602	moderate drought stress	2.878
SRR1811619	moderate drought stress	2.967

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.506
DRR006520	Root Summer glycyrrhizin high producing strain	12.419
DRR006521	Root Winter glycyrrhizin high producing strain	1.199
DRR006522	Root Winter glycyrrhizin high producing strain	1.229
DRR006523	Root Summer glycyrrhizin low producing strain	24.164
DRR006524	Root Summer glycyrrhizin low producing strain	24.505
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.380
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.906

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.984
SRR2868004	Drought Stress (root)	14.667
SRR2967015	Control (root)	14.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.332
SRR9715740	Leaf	47.848
SRR9715741	Leaf	48.078
SRR9715739	Root	9.909
SRR9715742	Root	27.240
SRR9715743	Root	20.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.196
SRR8749028	MeJA induced 9h	2.569
SRR8749029	MeJA induced 9h	3.329
SRR8749030	Uninduced	3.427
SRR8749031	Uninduced	0.215
SRR8749032	Uninduced	0.425

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.502
SRR8400027	Control - Root	33.792