Gene detail

Gene detail information of Glyur000309s00018419.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14540.1	5.00E-54	nuclear factor Y, subunit B3
NR	XP_006602134.1	2.68E-107	PREDICTED: nuclear transcription factor Y subunit B-2 [Glycine max]
Swissprot	tr\|O23310\|NFYB3_ARATH	2.00E-71	Nuclear transcription factor Y subunit B-3
trEMBL	tr\|I1KYJ4\|I1KYJ4_SOYBN	1.00E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G44140.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00309	74964	76047	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0005634 nucleus

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000309s00018419.1	PF00808.18	CBFD_NFYB_HMF	32	96	6.00E-28

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	19.759
SRR1783600	control	19.451
SRR1783602	moderate drought stress	21.727
SRR1811619	moderate drought stress	21.217

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.651
DRR006520	Root Summer glycyrrhizin high producing strain	22.706
DRR006521	Root Winter glycyrrhizin high producing strain	6.635
DRR006522	Root Winter glycyrrhizin high producing strain	5.844
DRR006523	Root Summer glycyrrhizin low producing strain	19.480
DRR006524	Root Summer glycyrrhizin low producing strain	19.105
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.074

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.472
SRR2868004	Drought Stress (root)	23.953
SRR2967015	Control (root)	28.684

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.583
SRR9715740	Leaf	41.696
SRR9715741	Leaf	39.981
SRR9715739	Root	50.342
SRR9715742	Root	29.050
SRR9715743	Root	29.832

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.075
SRR8749028	MeJA induced 9h	29.812
SRR8749029	MeJA induced 9h	20.233
SRR8749030	Uninduced	39.159
SRR8749031	Uninduced	24.906
SRR8749032	Uninduced	43.468

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.279
SRR8400027	Control - Root	21.776